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    caskin2 CASK interacting protein 2 [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115560980, updated on 23-Oct-2023

    Summary

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    Gene symbol
    caskin2
    Gene description
    CASK interacting protein 2
    See related
    Ensembl:ENSGMOG00000028083
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
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    Genomic context

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    See caskin2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 2 NC_044049.1 (6649195..6698848, complement)

    Chromosome 2 - NC_044049.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115561039 Neighboring gene heat shock 70 kDa protein-like Neighboring gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 Neighboring gene transfer RNA leucine (anticodon CAG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044049.1 Chromosome 2 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caskin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044049.1 Reference gadMor3.0 Primary Assembly

      Range
      6649195..6698848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030380749.1 → XP_030236609.1  caskin-2 isoform X5

      UniProtKB/TrEMBL
      A0A8C5BX17
      Related
      ENSGMOP00000031104.1, ENSGMOT00000061443.1
      Conserved Domains (11) summary
      cd09497
      Location:467 → 532
      SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
      cd09498
      Location:533 → 603
      SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
      cd12063
      Location:284 → 345
      SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
      PHA03095
      Location:41 → 258
      PHA03095; ankyrin-like protein; Provisional
      PRK05641
      Location:1149 → 1205
      PRK05641; putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
      sd00045
      Location:114 → 145
      ANK; ANK repeat [structural motif]
      pfam09770
      Location:380 → 475
      PAT1; Topoisomerase II-associated protein PAT1
      pfam13637
      Location:7 → 69
      Ank_4; Ankyrin repeats (many copies)
      pfam16600
      Location:349 → 373
      Caskin1-CID; Caskin1 CASK-interaction domain
      pfam16632
      Location:1210 → 1270
      Caskin-tail; C-terminal region of Caskin
      pfam16907
      Location:793 → 896
      Caskin-Pro-rich; Proline rich region of Caskin proteins

    2. XM_030380741.1 → XP_030236601.1  caskin-2 isoform X4

      UniProtKB/TrEMBL
      A0A8C5BX17
      Related
      ENSGMOP00000067798.1, ENSGMOT00000038812.1
      Conserved Domains (11) summary
      cd09497
      Location:490 → 555
      SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
      cd09498
      Location:556 → 626
      SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
      cd12063
      Location:284 → 345
      SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
      PHA03095
      Location:41 → 258
      PHA03095; ankyrin-like protein; Provisional
      PRK05641
      Location:1172 → 1228
      PRK05641; putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
      sd00045
      Location:114 → 145
      ANK; ANK repeat [structural motif]
      pfam09770
      Location:403 → 498
      PAT1; Topoisomerase II-associated protein PAT1
      pfam13637
      Location:7 → 69
      Ank_4; Ankyrin repeats (many copies)
      pfam16600
      Location:362 → 396
      Caskin1-CID; Caskin1 CASK-interaction domain
      pfam16632
      Location:1233 → 1293
      Caskin-tail; C-terminal region of Caskin
      pfam16907
      Location:816 → 919
      Caskin-Pro-rich; Proline rich region of Caskin proteins

    3. XM_030380730.1 → XP_030236590.1  caskin-2 isoform X3

      UniProtKB/TrEMBL
      A0A8C5BX17
      Related
      ENSGMOP00000052250.1, ENSGMOT00000039460.1
      Conserved Domains (11) summary
      cd09497
      Location:521 → 586
      SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
      cd09498
      Location:587 → 657
      SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
      cd12063
      Location:284 → 345
      SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
      PHA03095
      Location:41 → 258
      PHA03095; ankyrin-like protein; Provisional
      PRK05641
      Location:1203 → 1259
      PRK05641; putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
      sd00045
      Location:114 → 145
      ANK; ANK repeat [structural motif]
      pfam09770
      Location:434 → 529
      PAT1; Topoisomerase II-associated protein PAT1
      pfam13637
      Location:7 → 69
      Ank_4; Ankyrin repeats (many copies)
      pfam16600
      Location:403 → 427
      Caskin1-CID; Caskin1 CASK-interaction domain
      pfam16632
      Location:1264 → 1324
      Caskin-tail; C-terminal region of Caskin
      pfam16907
      Location:847 → 950
      Caskin-Pro-rich; Proline rich region of Caskin proteins

    4. XM_030380722.1 → XP_030236582.1  caskin-2 isoform X2

      UniProtKB/TrEMBL
      A0A8C5BX17
      Conserved Domains (10) summary
      cd09497
      Location:543 → 608
      SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
      cd09498
      Location:609 → 679
      SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
      cd12063
      Location:284 → 345
      SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
      PHA03095
      Location:41 → 258
      PHA03095; ankyrin-like protein; Provisional
      PRK05641
      Location:1225 → 1281
      PRK05641; putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
      sd00045
      Location:114 → 145
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:7 → 69
      Ank_4; Ankyrin repeats (many copies)
      pfam16600
      Location:416 → 450
      Caskin1-CID; Caskin1 CASK-interaction domain
      pfam16632
      Location:1286 → 1346
      Caskin-tail; C-terminal region of Caskin
      pfam16907
      Location:869 → 972
      Caskin-Pro-rich; Proline rich region of Caskin proteins

    5. XM_030380713.1 → XP_030236573.1  caskin-2 isoform X1

      UniProtKB/TrEMBL
      A0A8C5BX17
      Related
      ENSGMOP00000036785.1, ENSGMOT00000057825.1
      Conserved Domains (11) summary
      cd09497
      Location:544 → 609
      SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
      cd09498
      Location:610 → 680
      SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
      cd12063
      Location:284 → 345
      SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
      PHA03095
      Location:41 → 258
      PHA03095; ankyrin-like protein; Provisional
      PRK05641
      Location:1226 → 1282
      PRK05641; putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
      sd00045
      Location:114 → 145
      ANK; ANK repeat [structural motif]
      pfam09770
      Location:457 → 552
      PAT1; Topoisomerase II-associated protein PAT1
      pfam13637
      Location:7 → 69
      Ank_4; Ankyrin repeats (many copies)
      pfam16600
      Location:416 → 450
      Caskin1-CID; Caskin1 CASK-interaction domain
      pfam16632
      Location:1287 → 1347
      Caskin-tail; C-terminal region of Caskin
      pfam16907
      Location:870 → 973
      Caskin-Pro-rich; Proline rich region of Caskin proteins
    Nucleotide Protein
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