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    LOC100226815 kelch-like protein 3 [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100226815, updated on 13-Aug-2024

    Summary

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    Gene symbol
    LOC100226815
    Gene description
    kelch-like protein 3
    See related
    Ensembl:ENSTGUG00000001194
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
    Also known as
    KLHL3
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    Genomic context

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    See LOC100226815 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bTaeGut1.4.pri (GCF_003957565.2) 13 NC_044225.2 (9995187..10057343, complement)
    105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 13 NC_045012.1 (10440478..10502432, complement)

    Chromosome 13 - NC_044225.2Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily C member 7 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 Neighboring gene uncharacterized LOC115497118 Neighboring gene neuropeptide Y receptor type 6-like Neighboring gene myotilin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in renal sodium ion absorption IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kelch-like protein 3
    Names
    kelch like family member 3
    kelch-like 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut1.4.pri Primary Assembly

    Genomic

    1. NC_044225.2 Reference bTaeGut1.4.pri Primary Assembly

      Range
      9995187..10057343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030284105.3 → XP_030139965.1  kelch-like protein 3 isoform X2

      Conserved Domains (6) summary
      PHA03098
      Location:362 → 748
      PHA03098; kelch-like protein; Provisional
      cd12326
      Location:5 → 83
      RRM1_hnRNPA0; RNA recognition motif 1 found in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins
      cd12579
      Location:99 → 178
      RRM2_hnRNPA0; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins
      sd00038
      Location:613 → 658
      Kelch; KELCH repeat [structural motif]
      cl38908
      Location:302 → 396
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      cl28903
      Location:373 → 458
      BACK; BACK (BTB and C-terminal Kelch) domain

    2. XM_002187147.6 → XP_002187183.4  kelch-like protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A674GY67
      Related
      ENSTGUP00000027510.1
      Conserved Domains (6) summary
      PHA03098
      Location:323 → 839
      PHA03098; kelch-like protein; Provisional
      cd12326
      Location:5 → 83
      RRM1_hnRNPA0; RNA recognition motif 1 found in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins
      cd12579
      Location:99 → 178
      RRM2_hnRNPA0; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins
      sd00038
      Location:704 → 749
      Kelch; KELCH repeat [structural motif]
      cd18339
      Location:302 → 422
      BTB_POZ_KLHL3; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 3 (KLHL3)
      cd18513
      Location:420 → 549
      BACK_KLHL3; BACK (BTB and C-terminal Kelch) domain found in Kelch-like protein 3 (KLHL3)

    3. XM_030284106.3 → XP_030139966.1  kelch-like protein 3 isoform X3

      Related
      ENSTGUP00000025941.1
      Conserved Domains (4) summary
      PHA03098
      Location:49 → 565
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:430 → 475
      Kelch; KELCH repeat [structural motif]
      cd18339
      Location:28 → 148
      BTB_POZ_KLHL3; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 3 (KLHL3)
      cd18513
      Location:146 → 275
      BACK_KLHL3; BACK (BTB and C-terminal Kelch) domain found in Kelch-like protein 3 (KLHL3)

    4. XM_030284109.3 → XP_030139969.1  kelch-like protein 3 isoform X5

      Conserved Domains (3) summary
      PHA03098
      Location:22 → 484
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:349 → 394
      Kelch; KELCH repeat [structural motif]
      cd18513
      Location:65 → 194
      BACK_KLHL3; BACK (BTB and C-terminal Kelch) domain found in Kelch-like protein 3 (KLHL3)

    5. XM_030284108.3 → XP_030139968.1  kelch-like protein 3 isoform X4

      Conserved Domains (3) summary
      PHA03098
      Location:3 → 506
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:371 → 416
      Kelch; KELCH repeat [structural motif]
      cd18513
      Location:87 → 216
      BACK_KLHL3; BACK (BTB and C-terminal Kelch) domain found in Kelch-like protein 3 (KLHL3)

    RNA

    1. XR_003962696.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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