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    Zfp329 zinc finger protein 329 [ Mus musculus (house mouse) ]

    Gene ID: 67230, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Zfp329provided by MGI
    Official Full Name
    zinc finger protein 329provided by MGI
    Primary source
    MGI:MGI:1921283
    See related
    Ensembl:ENSMUSG00000057894 AllianceGenome:MGI:1921283
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ZNF329; 2810439M05Rik; 4632409L22Rik
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in central nervous system and genitourinary system. Orthologous to human ZNF329 (zinc finger protein 329). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 4.2), CNS E14 (RPKM 3.9) and 24 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Zfp329 in Genome Data Viewer
    Location:
    7 A1; 7 7.64 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (12537705..12552844, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (12803778..12818895, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 18 Neighboring gene dnaJ homolog subfamily B member 6 pseudogene Neighboring gene zinc finger protein 329 pseudogene Neighboring gene STARR-seq mESC enhancer starr_18057 Neighboring gene zinc finger protein 110 Neighboring gene predicted gene, 45971

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
    3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    4. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 329

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026046.3 → NP_080322.2  zinc finger protein 329

      See identical proteins and their annotated locations for NP_080322.2

      Status: VALIDATED

      Source sequence(s)
      AC107704, BC072665
      Consensus CDS
      CCDS20813.1
      UniProtKB/Swiss-Prot
      Q6GQR8, Q8BKL5, Q9D459
      UniProtKB/TrEMBL
      B2RSV9
      Related
      ENSMUSP00000072079.8, ENSMUST00000072222.8
      Conserved Domains (2) summary
      COG5048
      Location:195 → 450
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:214 → 234
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      12537705..12552844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036153380.1 → XP_036009273.1  zinc finger protein 329 isoform X4

      UniProtKB/TrEMBL
      D3Z6L7
      Related
      ENSMUSP00000104186.2, ENSMUST00000108546.2
      Conserved Domains (3) summary
      COG5048
      Location:167 → 247
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:186 → 206
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:240 → 262
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_030242923.2 → XP_030098783.1  zinc finger protein 329 isoform X3

      UniProtKB/Swiss-Prot
      Q6GQR8, Q8BKL5, Q9D459
      UniProtKB/TrEMBL
      B2RSV9
      Conserved Domains (2) summary
      COG5048
      Location:195 → 450
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:214 → 234
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_006540315.4 → XP_006540378.1  zinc finger protein 329 isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:226 → 481
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:245 → 265
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:482 → 506
      zf-H2C2_2; Zinc-finger double domain

    4. XM_011250682.2 → XP_011248984.1  zinc finger protein 329 isoform X2

      Conserved Domains (3) summary
      COG5048
      Location:225 → 480
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:244 → 264
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:481 → 505
      zf-H2C2_2; Zinc-finger double domain

    5. XM_036153379.1 → XP_036009272.1  zinc finger protein 329 isoform X3

      UniProtKB/Swiss-Prot
      Q6GQR8, Q8BKL5, Q9D459
      UniProtKB/TrEMBL
      B2RSV9
      Conserved Domains (2) summary
      COG5048
      Location:195 → 450
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:214 → 234
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RNA

    1. XR_003946543.2 RNA Sequence

    2. XR_003946544.2 RNA Sequence

    3. XR_004934171.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6GQR8.2 GenPept UniProtKB/Swiss-Prot:Q6GQR8

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