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    Plekhd1 pleckstrin homology and coiled-coil domain containing D1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500685, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Plekhd1provided by RGD
    Official Full Name
    pleckstrin homology and coiled-coil domain containing D1provided by RGD
    Primary source
    RGD:1566112
    See related
    EnsemblRapid:ENSRNOG00000038297 AllianceGenome:RGD:1566112
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566112
    Summary
    Orthologous to human PLEKHD1 (pleckstrin homology and coiled-coil domain containing D1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 33.2), Brain (RPKM 24.6) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Plekhd1 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (106071966..106103250)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (100340655..100371942)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (104340114..104371162)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479447 Neighboring gene solute carrier family 39, member 9 Neighboring gene ERH, mRNA splicing and mitosis factor Neighboring gene coiled-coil domain containing 177 Neighboring gene sushi domain containing 6 Neighboring gene serine and arginine rich splicing factor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    pleckstrin homology domain-containing family D member 1
    Names
    PH domain-containing family D member 1
    UPF0639 protein
    pleckstrin homology domain containing, family D (with M protein repeats) member 1
    pleckstrin homology domain containing, family D (with coiled-coil domains) member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127566.1 → NP_001121038.1  pleckstrin homology domain-containing family D member 1

      See identical proteins and their annotated locations for NP_001121038.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161896
      UniProtKB/Swiss-Prot
      B1WBU8
      UniProtKB/TrEMBL
      A6JDK0
      Related
      ENSRNOP00000055103.2, ENSRNOT00000058301.6
      Conserved Domains (3) summary
      cd13281
      Location:18 → 156
      PH_PLEKHD1; Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain
      pfam00169
      Location:29 → 134
      PH; PH domain
      pfam09798
      Location:168 → 285
      LCD1; DNA damage checkpoint protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      106071966..106103250
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B1WBU8.1 GenPept UniProtKB/Swiss-Prot:B1WBU8

    Gene LinkOut

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