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    MARF1 meiosis regulator and mRNA stability factor 1 [ Suricata suricatta (meerkat) ]

    Gene ID: 115297966, updated on 17-Mar-2024

    Summary

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    Gene symbol
    MARF1
    Gene description
    meiosis regulator and mRNA stability factor 1
    See related
    Ensembl:ENSSSUG00005023618
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Suricata suricatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Herpestidae; Suricata
    Orthologs
    human mouse all
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    Genomic context

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    See MARF1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    100 current meerkat_22Aug2017_6uvM2_HiC (GCF_006229205.1) 8 NC_043707.1 (11745433..11785326, complement)

    Chromosome 8 - NC_043707.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115299294 Neighboring gene bMERB domain containing 1 Neighboring gene uncharacterized LOC115299293 Neighboring gene nudE neurodevelopment protein 1 Neighboring gene myosin heavy chain 11 Neighboring gene uncharacterized LOC115299536

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043707.1 Chromosome 8 Reference meerkat_22Aug2017_6uvM2_HiC

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR4-NOT complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA base-pairing translational repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    meiosis regulator and mRNA stability factor 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Suricata suricatta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference meerkat_22Aug2017_6uvM2_HiC

    Genomic

    1. NC_043707.1 Reference meerkat_22Aug2017_6uvM2_HiC

      Range
      11745433..11785326 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029946223.1 → XP_029802083.1  meiosis regulator and mRNA stability factor 1 isoform X8

      UniProtKB/TrEMBL
      A0A673VU44
      Conserved Domains (12) summary
      cd09977
      Location:697 → 758
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:825 → 895
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:921 → 992
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:997 → 1068
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1081 → 1151
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1157 → 1227
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1233 → 1305
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1308 → 1383
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      cd12255
      Location:331 → 403
      RRM1_LKAP; RNA recognition motif 1 in Limkain-b1 (LKAP) and similar proteins
      cd12256
      Location:608 → 696
      RRM2_LKAP; RNA recognition motif 2 in Limkain-b1 (LKAP) and similar proteins
      TIGR01661
      Location:502 → 695
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd10910
      Location:173 → 295
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

    2. XM_029946221.1 → XP_029802081.1  meiosis regulator and mRNA stability factor 1 isoform X6

      UniProtKB/TrEMBL
      A0A673VU44
      Related
      ENSSSUP00005036996.1, ENSSSUT00005042116.1
      Conserved Domains (12) summary
      cd09977
      Location:813 → 874
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:941 → 1011
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1037 → 1108
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1113 → 1184
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1197 → 1267
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1273 → 1343
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1349 → 1421
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1424 → 1499
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      cd12255
      Location:447 → 519
      RRM1_LKAP; RNA recognition motif 1 in Limkain-b1 (LKAP) and similar proteins
      cd12256
      Location:724 → 812
      RRM2_LKAP; RNA recognition motif 2 in Limkain-b1 (LKAP) and similar proteins
      TIGR01661
      Location:618 → 811
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd10910
      Location:289 → 411
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

    3. XM_029946222.1 → XP_029802082.1  meiosis regulator and mRNA stability factor 1 isoform X7

      UniProtKB/TrEMBL
      A0A673VU50
      Related
      ENSSSUP00005037001.1, ENSSSUT00005042121.1
      Conserved Domains (11) summary
      cd09977
      Location:735 → 796
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:863 → 933
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:959 → 1030
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1035 → 1106
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1119 → 1189
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1195 → 1265
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1271 → 1343
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1346 → 1421
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      cd12256
      Location:646 → 734
      RRM2_LKAP; RNA recognition motif 2 in Limkain-b1 (LKAP) and similar proteins
      TIGR01661
      Location:540 → 733
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd10910
      Location:354 → 476
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

    4. XM_029946220.1 → XP_029802080.1  meiosis regulator and mRNA stability factor 1 isoform X5

      UniProtKB/TrEMBL
      A0A673VU44

    5. XM_029946217.1 → XP_029802077.1  meiosis regulator and mRNA stability factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A673VU44

    6. XM_029946218.1 → XP_029802078.1  meiosis regulator and mRNA stability factor 1 isoform X3

      UniProtKB/TrEMBL
      A0A673VU44

    7. XM_029946219.1 → XP_029802079.1  meiosis regulator and mRNA stability factor 1 isoform X4

      UniProtKB/TrEMBL
      A0A673VU39, A0A673VU44
      Related
      ENSSSUP00005036991.1, ENSSSUT00005042110.1

    8. XM_029946215.1 → XP_029802075.1  meiosis regulator and mRNA stability factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A673VU44
      Conserved Domains (12) summary
      cd09977
      Location:878 → 939
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:1006 → 1076
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1102 → 1173
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1178 → 1249
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1262 → 1332
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1338 → 1408
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1414 → 1486
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1489 → 1564
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      cd12255
      Location:512 → 584
      RRM1_LKAP; RNA recognition motif 1 in Limkain-b1 (LKAP) and similar proteins
      cd12256
      Location:789 → 877
      RRM2_LKAP; RNA recognition motif 2 in Limkain-b1 (LKAP) and similar proteins
      TIGR01661
      Location:683 → 876
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd10910
      Location:354 → 476
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

    9. XM_029946216.1 → XP_029802076.1  meiosis regulator and mRNA stability factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A673VU44
      Conserved Domains (12) summary
      cd09977
      Location:878 → 939
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:1006 → 1076
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1102 → 1173
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1178 → 1249
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1262 → 1332
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1338 → 1408
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1414 → 1486
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1489 → 1564
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      cd12255
      Location:512 → 584
      RRM1_LKAP; RNA recognition motif 1 in Limkain-b1 (LKAP) and similar proteins
      cd12256
      Location:789 → 877
      RRM2_LKAP; RNA recognition motif 2 in Limkain-b1 (LKAP) and similar proteins
      TIGR01661
      Location:683 → 876
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd10910
      Location:354 → 476
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

    10. XM_029946224.1 → XP_029802084.1  meiosis regulator and mRNA stability factor 1 isoform X9

      UniProtKB/TrEMBL
      A0A673VU44
      Conserved Domains (11) summary
      cd09977
      Location:878 → 939
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:1006 → 1076
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1102 → 1173
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1178 → 1249
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1262 → 1332
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1338 → 1408
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1414 → 1473
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd12255
      Location:512 → 584
      RRM1_LKAP; RNA recognition motif 1 in Limkain-b1 (LKAP) and similar proteins
      cd12256
      Location:789 → 877
      RRM2_LKAP; RNA recognition motif 2 in Limkain-b1 (LKAP) and similar proteins
      TIGR01661
      Location:683 → 876
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd10910
      Location:354 → 476
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    Nucleotide Protein
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