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    MICAL1 microtubule associated monooxygenase, calponin and LIM domain containing 1 [ Rhinatrema bivittatum (two-lined caecilian) ]

    Gene ID: 115073906, updated on 17-Mar-2024

    Summary

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    Gene symbol
    MICAL1
    Gene description
    microtubule associated monooxygenase, calponin and LIM domain containing 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinatrema bivittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
    Orthologs
    human mouse all
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    Genomic context

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    See MICAL1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    100 current aRhiBiv1.1 (GCF_901001135.1) 12 NC_042626.1 (13692689..13731371, complement)

    Chromosome 12 - NC_042626.1Genomic Context describing neighboring genes Neighboring gene TEA domain transcription factor 3 Neighboring gene sphingomyelin phosphodiesterase 2 Neighboring gene lymphoid-restricted membrane protein-like Neighboring gene ribosomal protein L10a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042626.1 Chromosome 12 Reference aRhiBiv1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-actin-monooxygenase MICAL1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aRhiBiv1.1 Primary Assembly

    Genomic

    1. NC_042626.1 Reference aRhiBiv1.1 Primary Assembly

      Range
      13692689..13731371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029572851.1 → XP_029428711.1  F-actin-monooxygenase MICAL1 isoform X2

      Conserved Domains (6) summary
      cd09439
      Location:725 → 779
      LIM_Mical; The LIM domain of Mical (molecule interacting with CasL)
      PHA03307
      Location:796 → 1002
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam00307
      Location:522 → 625
      CH; Calponin homology (CH) domain
      pfam01494
      Location:90 → 127
      FAD_binding_3; FAD binding domain
      pfam12130
      Location:1154 → 1282
      DUF3585; Protein of unknown function (DUF3585)
      pfam17380
      Location:926 → 1282
      DUF5401; Family of unknown function (DUF5401)

    2. XM_029572846.1 → XP_029428706.1  F-actin-monooxygenase MICAL1 isoform X1

    3. XM_029572847.1 → XP_029428707.1  F-actin-monooxygenase MICAL1 isoform X1

    4. XM_029572848.1 → XP_029428708.1  F-actin-monooxygenase MICAL1 isoform X1

    5. XM_029572849.1 → XP_029428709.1  F-actin-monooxygenase MICAL1 isoform X1

    6. XM_029572850.1 → XP_029428710.1  F-actin-monooxygenase MICAL1 isoform X1

      Conserved Domains (6) summary
      PHA03269
      Location:794 → 866
      PHA03269; envelope glycoprotein C; Provisional
      cd09439
      Location:725 → 779
      LIM_Mical; The LIM domain of Mical (molecule interacting with CasL)
      pfam00307
      Location:522 → 625
      CH; Calponin homology (CH) domain
      pfam01494
      Location:90 → 127
      FAD_binding_3; FAD binding domain
      pfam12130
      Location:1154 → 1247
      DUF3585; Protein of unknown function (DUF3585)
      pfam17380
      Location:926 → 1234
      DUF5401; Family of unknown function (DUF5401)
    Nucleotide Protein
    Heading Accession and Version

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