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    IFI27 interferon, alpha-inducible protein 27 [ Equus caballus (horse) ]

    Gene ID: 100064838, updated on 18-Dec-2024

    Summary

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    Gene symbol
    IFI27
    Gene description
    interferon, alpha-inducible protein 27
    See related
    Ensembl:ENSECAG00000017172
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Also known as
    ISG12(A)
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    Genomic context

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    See IFI27 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current TB-T2T (GCF_041296265.1) 24 NC_091707.1 (49637916..49642792)
    RS_2024_08 previous assembly EquCab3.0 (GCF_002863925.1) 24 NC_009167.3 (37163205..37168010)

    Chromosome 24 - NC_091707.1Genomic Context describing neighboring genes Neighboring gene interferon alpha-inducible protein 27-like protein 2 Neighboring gene uncharacterized LOC138920592 Neighboring gene microtubule-associated proteins 1A/1B light chain 3B pseudogene Neighboring gene interferon alpha-inducible protein 27-like protein 2 Neighboring gene uncharacterized LOC138920633 Neighboring gene uncharacterized LOC111770397

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Thoroughbred Stallion gene expression
    • BioProject: PRJEB53382
    • Analysis date: Mon Jan 06 09:53:19 2025

    Bibliography

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    Related articles in PubMed

    1. Identification of a novel gene family that includes the interferon-inducible human genes 6-16 and ISG12. Parker N, et al. BMC Genomics, 2004 Jan 19. PMID 14728724, Free PMC Article
    2. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in apoptotic signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon, alpha-inducible protein 27
    Names
    IFN stimulated gene 12(A)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114146.1 → NP_001107618.1  interferon, alpha-inducible protein 27

      Status: PROVISIONAL

      Source sequence(s)
      BM735054
      UniProtKB/TrEMBL
      F6WPD2, Q6IEC7
      Related
      ENSECAP00000014827.1, ENSECAT00000018190.3
      Conserved Domains (1) summary
      pfam06140
      Location:79 → 153
      Ifi-6-16; Interferon-induced 6-16 family

    RefSeqs of Annotated Genomes: GCF_041296265.1-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TB-T2T Primary Assembly

    Genomic

    1. NC_091707.1 Reference TB-T2T Primary Assembly

      Range
      49637916..49642792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_070249145.1 → XP_070105246.1  interferon, alpha-inducible protein 27 isoform X1

    2. XM_005605175.4 → XP_005605232.1  interferon, alpha-inducible protein 27 isoform X2

      See identical proteins and their annotated locations for XP_005605232.1

      UniProtKB/TrEMBL
      A0A9L0RAL7
      Related
      ENSECAP00000059526.1
      Conserved Domains (1) summary
      pfam06140
      Location:94 → 168
      Ifi-6-16; Interferon-induced 6-16 family
    Nucleotide Protein
    Heading Accession and Version

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