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    LOC108918776 receptor-type tyrosine-protein phosphatase zeta-like [ Scleropages formosus (Asian bonytongue) ]

    Gene ID: 108918776, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC108918776
    Gene description
    receptor-type tyrosine-protein phosphatase zeta-like
    See related
    Ensembl:ENSSFOG00015007075
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scleropages formosus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
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    Genomic context

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    See LOC108918776 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    101 current fSclFor1.1 (GCF_900964775.1) 21 NC_041826.1 (15528347..15574648, complement)
    100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017372279.1 (4592224..4638807, complement)

    Chromosome 21 - NC_041826.1Genomic Context describing neighboring genes Neighboring gene calcium-dependent secretion activator 2-like Neighboring gene fez family zinc finger protein 1-like Neighboring gene dihydrolipoamide dehydrogenase Neighboring gene laminin subunit beta 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-tyrosine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-type tyrosine-protein phosphatase zeta-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSclFor1.1 Primary Assembly

    Genomic

    1. NC_041826.1 Reference fSclFor1.1 Primary Assembly

      Range
      15528347..15574648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018726303.2 → XP_018581819.2  receptor-type tyrosine-protein phosphatase zeta-like isoform X3

      UniProtKB/TrEMBL
      A0A0P7VMU2
      Conserved Domains (4) summary
      cd03122
      Location:48 → 301
      alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      pfam00041
      Location:316 → 398
      fn3; Fibronectin type III domain
      cd14550
      Location:1622 → 1822
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl28904
      Location:1269 → 1539
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    2. XM_018726302.2 → XP_018581818.2  receptor-type tyrosine-protein phosphatase zeta-like isoform X2

      UniProtKB/TrEMBL
      A0A0P7VMU2
      Conserved Domains (4) summary
      cd03122
      Location:48 → 301
      alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      pfam00041
      Location:316 → 398
      fn3; Fibronectin type III domain
      cd14550
      Location:1628 → 1828
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl28904
      Location:1278 → 1546
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    3. XM_018726301.2 → XP_018581817.2  receptor-type tyrosine-protein phosphatase zeta-like isoform X1

      UniProtKB/TrEMBL
      A0A0P7VMU2
      Conserved Domains (4) summary
      cd03122
      Location:48 → 301
      alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      pfam00041
      Location:316 → 398
      fn3; Fibronectin type III domain
      cd14550
      Location:1629 → 1829
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl28904
      Location:1278 → 1546
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    4. XM_018726307.2 → XP_018581823.2  receptor-type tyrosine-protein phosphatase zeta-like isoform X6

      UniProtKB/TrEMBL
      A0A8C9U2P4
      Conserved Domains (4) summary
      cd03122
      Location:48 → 301
      alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      pfam00041
      Location:316 → 398
      fn3; Fibronectin type III domain
      cd14550
      Location:1279 → 1479
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl28904
      Location:928 → 1196
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    5. XM_029247252.1 → XP_029103085.1  receptor-type tyrosine-protein phosphatase zeta-like isoform X8

      UniProtKB/TrEMBL
      A0A8C9U2P4, A0A8D0CE30
      Related
      ENSSFOP00015065829.1, ENSSFOT00015050282.1
      Conserved Domains (4) summary
      cd03122
      Location:48 → 301
      alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      pfam00041
      Location:316 → 398
      fn3; Fibronectin type III domain
      cd14550
      Location:1108 → 1308
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl28904
      Location:755 → 1025
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    6. XM_018726308.2 → XP_018581824.2  receptor-type tyrosine-protein phosphatase zeta-like isoform X7

      UniProtKB/TrEMBL
      A0A8C9SY42, A0A8C9U2P4
      Related
      ENSSFOP00015040306.1, ENSSFOT00015040465.1
      Conserved Domains (4) summary
      cd03122
      Location:48 → 301
      alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
      pfam00041
      Location:316 → 398
      fn3; Fibronectin type III domain
      cd14550
      Location:1115 → 1315
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl28904
      Location:764 → 1032
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    7. XM_018726305.2 → XP_018581821.2  receptor-type tyrosine-protein phosphatase zeta-like isoform X5

      UniProtKB/TrEMBL
      A0A0P7VMU2
      Conserved Domains (4) summary
      pfam00041
      Location:73 → 155
      fn3; Fibronectin type III domain
      cd14550
      Location:1386 → 1586
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl00012
      Location:19 → 58
      alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...
      cl28904
      Location:1035 → 1303
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    8. XM_029247251.1 → XP_029103084.1  receptor-type tyrosine-protein phosphatase zeta-like isoform X5

      UniProtKB/TrEMBL
      A0A0P7VMU2
      Conserved Domains (4) summary
      pfam00041
      Location:73 → 155
      fn3; Fibronectin type III domain
      cd14550
      Location:1386 → 1586
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl00012
      Location:19 → 58
      alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...
      cl28904
      Location:1035 → 1303
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    9. XM_018726306.2 → XP_018581822.2  receptor-type tyrosine-protein phosphatase zeta-like isoform X5

      UniProtKB/TrEMBL
      A0A0P7VMU2
      Conserved Domains (4) summary
      pfam00041
      Location:73 → 155
      fn3; Fibronectin type III domain
      cd14550
      Location:1386 → 1586
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl00012
      Location:19 → 58
      alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...
      cl28904
      Location:1035 → 1303
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    10. XM_018726304.2 → XP_018581820.2  receptor-type tyrosine-protein phosphatase zeta-like isoform X4

      UniProtKB/TrEMBL
      A0A0P7VMU2
      Conserved Domains (4) summary
      pfam00041
      Location:134 → 216
      fn3; Fibronectin type III domain
      cd14550
      Location:1447 → 1647
      R5-PTP-2; PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2
      cl00012
      Location:6 → 119
      alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...
      cl28904
      Location:1096 → 1364
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
    Nucleotide Protein
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