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    SGCD sarcoglycan delta [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715190, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SGCDprovided by VGNC
    Official Full Name
    sarcoglycan deltaprovided by VGNC
    Primary source
    VGNC:VGNC:77192
    See related
    Ensembl:ENSMMUG00000004581
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SGCD in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (153748492..154172024)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (154450896..154924276)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678953 Neighboring gene peptidyl-prolyl cis-trans isomerase G pseudogene Neighboring gene uncharacterized LOC114678954 Neighboring gene U6 spliceosomal RNA Neighboring gene MICOS complex subunit MIC26 pseudogene Neighboring gene T cell immunoglobulin and mucin domain containing 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      153748492..154172024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001113209.4 → XP_001113209.4  delta-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      F6RNT8, G7MVQ9
      Conserved Domains (1) summary
      pfam04790
      Location:24 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    2. XM_015141314.2 → XP_014996800.2  delta-sarcoglycan isoform X2

      UniProtKB/TrEMBL
      G7MVQ9
      Conserved Domains (1) summary
      pfam04790
      Location:23 → 277
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    3. XM_028849861.1 → XP_028705694.1  delta-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      F6RNT8, G7MVQ9
      Related
      ENSMMUP00000006090.4, ENSMMUT00000006477.4
      Conserved Domains (1) summary
      pfam04790
      Location:24 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    Nucleotide Protein
    Heading Accession and Version

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