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    SGCE sarcoglycan epsilon [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700104, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SGCEprovided by VGNC
    Official Full Name
    sarcoglycan epsilonprovided by VGNC
    Primary source
    VGNC:VGNC:77193
    See related
    Ensembl:ENSMMUG00000016394
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SGCE in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (111475436..111546998)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (119936252..120007803, complement)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit B1, mitochondrial pseudogene Neighboring gene paternally expressed 10 Neighboring gene CAS1 domain containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene collagen type I alpha 2 chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    epsilon-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      111475436..111546998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001096667.3 → XP_001096667.1  epsilon-sarcoglycan isoform X10

      See identical proteins and their annotated locations for XP_001096667.1

      UniProtKB/TrEMBL
      F7G226
      Conserved Domains (1) summary
      pfam05510
      Location:34 → 409
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    2. XM_028846054.1 → XP_028701887.1  epsilon-sarcoglycan isoform X12

      UniProtKB/TrEMBL
      G7MLV3
      Conserved Domains (1) summary
      pfam05510
      Location:8 → 390
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    3. XM_028846055.1 → XP_028701888.1  epsilon-sarcoglycan isoform X14

      UniProtKB/TrEMBL
      A0A5F8A4P3
      Conserved Domains (1) summary
      pfam05510
      Location:1 → 328
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    4. XM_028846056.1 → XP_028701889.1  epsilon-sarcoglycan isoform X15

      UniProtKB/TrEMBL
      A0A5F8A4P3
      Conserved Domains (1) summary
      pfam05510
      Location:1 → 319
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    5. XM_015134276.2 → XP_014989762.1  epsilon-sarcoglycan isoform X3

      UniProtKB/TrEMBL
      A0A5F8AF12
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 454
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    6. XM_015134277.2 → XP_014989763.1  epsilon-sarcoglycan isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZVW5, A0A5F8AF12
      Related
      ENSMMUP00000068767.1, ENSMMUT00000085974.1
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 446
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    7. XM_015134278.1 → XP_014989764.1  epsilon-sarcoglycan isoform X5

      UniProtKB/TrEMBL
      F7G226, H9G1E8
      Conserved Domains (1) summary
      pfam05510
      Location:34 → 418
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    8. XM_015134280.1 → XP_014989766.1  epsilon-sarcoglycan isoform X7

      UniProtKB/TrEMBL
      G7MLV3, I0FW55
      Related
      ENSMMUP00000021530.4, ENSMMUT00000023018.4
      Conserved Domains (1) summary
      pfam05510
      Location:34 → 418
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    9. XM_001096777.2 → XP_001096777.1  epsilon-sarcoglycan isoform X9

      See identical proteins and their annotated locations for XP_001096777.1

      UniProtKB/TrEMBL
      A0A5F7ZTG4, G7MLV3
      Related
      ENSMMUP00000067937.1, ENSMMUT00000080568.1
      Conserved Domains (1) summary
      pfam05510
      Location:34 → 410
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    10. XM_028846052.1 → XP_028701885.1  epsilon-sarcoglycan isoform X11

      UniProtKB/TrEMBL
      A0A5F7ZTG4, G7MLV3
      Conserved Domains (1) summary
      pfam05510
      Location:34 → 409
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    11. XM_015134273.1 → XP_014989759.1  epsilon-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      A0A5F8AF12
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 454
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    12. XM_028846050.1 → XP_028701883.1  epsilon-sarcoglycan isoform X6

      UniProtKB/TrEMBL
      A0A1D5QIX0, G7MLV3
      Related
      ENSMMUP00000047992.2, ENSMMUT00000059361.2
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 454
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    13. XM_015134275.1 → XP_014989761.1  epsilon-sarcoglycan isoform X2

      UniProtKB/TrEMBL
      A0A5F8AF12
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 445
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    14. XM_015134282.1 → XP_014989768.1  epsilon-sarcoglycan isoform X13

      UniProtKB/TrEMBL
      A0A5F8A4P3
      Related
      ENSMMUP00000072860.1, ENSMMUT00000082175.1
      Conserved Domains (1) summary
      pfam05510
      Location:1 → 328
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    15. XM_028846053.1 → XP_028701886.1  epsilon-sarcoglycan isoform X12

      UniProtKB/TrEMBL
      G7MLV3
      Conserved Domains (1) summary
      pfam05510
      Location:8 → 390
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    16. XM_028846051.1 → XP_028701884.1  epsilon-sarcoglycan isoform X8

      UniProtKB/TrEMBL
      A0A5F8A4P3
      Conserved Domains (1) summary
      pfam05510
      Location:8 → 390
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    RNA

    1. XR_003728259.1 RNA Sequence

    2. XR_003728258.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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