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    UPF3A UPF3A regulator of nonsense mediated mRNA decay [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716601, updated on 17-Aug-2024

    Summary

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    Official Symbol
    UPF3Aprovided by VGNC
    Official Full Name
    UPF3A regulator of nonsense mediated mRNA decayprovided by VGNC
    Primary source
    VGNC:VGNC:79244
    See related
    Ensembl:ENSMMUG00000007449
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See UPF3A in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (95349819..95374209)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (95606251..95630128)

    Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene RAS p21 protein activator 3 Neighboring gene cell division cycle 16 Neighboring gene uncharacterized LOC106994408 Neighboring gene chromosome alignment maintaining phosphoprotein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcripts 3A
    Names
    UPF3 regulator of nonsense transcripts homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041770.1 Reference Mmul_10 Primary Assembly

      Range
      95349819..95374209
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028837407.1 → XP_028693240.1  regulator of nonsense transcripts 3A isoform X7

      Conserved Domains (1) summary
      cd12727
      Location:66 → 149
      RRM_like_Smg4_UPF3A; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog A (Upf3A)

    2. XM_028837406.1 → XP_028693239.1  regulator of nonsense transcripts 3A isoform X6

      UniProtKB/TrEMBL
      H9EZB0
      Conserved Domains (1) summary
      cd12727
      Location:66 → 152
      RRM_like_Smg4_UPF3A; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog A (Upf3A)

    3. XM_028837405.1 → XP_028693238.1  regulator of nonsense transcripts 3A isoform X5

      UniProtKB/TrEMBL
      A0A1D5QTR3, F7DV73
      Related
      ENSMMUP00000035984.3, ENSMMUT00000042971.3

    4. XM_028837400.1 → XP_028693233.1  regulator of nonsense transcripts 3A isoform X1

      UniProtKB/TrEMBL
      F6SWJ4
      Related
      ENSMMUP00000009769.4, ENSMMUT00000010408.4
      Conserved Domains (1) summary
      pfam03467
      Location:65 → 225
      Smg4_UPF3; Smg-4/UPF3 family

    5. XM_028837402.1 → XP_028693235.1  regulator of nonsense transcripts 3A isoform X3

      Conserved Domains (1) summary
      cd12727
      Location:66 → 152
      RRM_like_Smg4_UPF3A; RNA recognition motif (RRM)-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog A (Upf3A)

    6. XM_028837401.1 → XP_028693234.1  regulator of nonsense transcripts 3A isoform X2

      Conserved Domains (1) summary
      cd12727
      Location:66 → 149
      RRM_like_Smg4_UPF3A; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog A (Upf3A)

    7. XM_028837403.1 → XP_028693236.1  regulator of nonsense transcripts 3A isoform X4

      UniProtKB/TrEMBL
      G7NJP7
      Conserved Domains (1) summary
      cl17169
      Location:10 → 95
      RRM_SF; RNA recognition motif (RRM) superfamily

    8. XM_028837404.1 → XP_028693237.1  regulator of nonsense transcripts 3A isoform X5

      UniProtKB/TrEMBL
      A0A1D5QTR3, F7DV73
      Related
      ENSMMUP00000051443.2, ENSMMUT00000073276.2

    RNA

    1. XR_003724243.1 RNA Sequence

    2. XR_003724241.1 RNA Sequence

    3. XR_003724242.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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