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    SHOC1 shortage in chiasmata 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707991, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SHOC1provided by VGNC
    Official Full Name
    shortage in chiasmata 1provided by VGNC
    Primary source
    VGNC:VGNC:77316
    See related
    Ensembl:ENSMMUG00000023307
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    C9orf84; C15H9orf84
    Orthologs
    human mouse all
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    Genomic context

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    See SHOC1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (31030877..31136135)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (27602393..27708721)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene UDP-glucose ceramide glucosyltransferase Neighboring gene U6 spliceosomal RNA Neighboring gene G protein subunit gamma 10 Neighboring gene DnaJ (Hsp40) homolog, subfamily C , member 25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in resolution of meiotic recombination intermediates IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in condensed nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein shortage in chiasmata 1 ortholog
    Names
    chromosome 15 C9orf84 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194305.3 → NP_001181234.3  protein shortage in chiasmata 1 ortholog

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000140
      UniProtKB/TrEMBL
      F7HDW7, G7NEI1
      Related
      ENSMMUP00000039690.3, ENSMMUT00000046653.3
      Conserved Domains (1) summary
      pfam17825
      Location:1 → 1444
      DUF5587; Family of unknown function (DUF5587)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      31030877..31136135
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028834312.1 → XP_028690145.1  protein shortage in chiasmata 1 ortholog isoform X4

    2. XM_028834310.1 → XP_028690143.1  protein shortage in chiasmata 1 ortholog isoform X1

      UniProtKB/TrEMBL
      F7FAQ3, G7NEI1
      Related
      ENSMMUP00000030682.4, ENSMMUT00000032790.4

    3. XM_028834311.1 → XP_028690144.1  protein shortage in chiasmata 1 ortholog isoform X2

      UniProtKB/TrEMBL
      F7HDW7, G7NEI1
      Conserved Domains (1) summary
      pfam17825
      Location:1 → 1444
      DUF5587; Family of unknown function (DUF5587)

    4. XM_015116998.2 → XP_014972484.2  protein shortage in chiasmata 1 ortholog isoform X3

      UniProtKB/TrEMBL
      F7FAP8

    5. XM_001105127.4 → XP_001105127.4  protein shortage in chiasmata 1 ortholog isoform X5

      UniProtKB/TrEMBL
      G7NEI1
    Nucleotide Protein
    Heading Accession and Version

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