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    DDX54 DEAD-box helicase 54 [ Podarcis muralis (Common wall lizard) ]

    Gene ID: 114587031, updated on 15-Mar-2024

    Summary

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    Gene symbol
    DDX54
    Gene description
    DEAD-box helicase 54
    See related
    Ensembl:ENSPMRG00000022614
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Podarcis muralis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
    Orthologs
    human mouse all
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    Genomic context

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    See DDX54 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current PodMur_1.0 (GCF_004329235.1) 16 NC_041327.1 (22584799..22607708)

    Chromosome 16 - NC_041327.1Genomic Context describing neighboring genes Neighboring gene IQ motif containing D Neighboring gene RBPJ interacting and tubulin associated 1 Neighboring gene cilia and flagella associated protein 73 Neighboring gene RAS protein activator like 1 Neighboring gene deltex E3 ubiquitin ligase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041327.1 Chromosome 16 Reference PodMur_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX54

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Podarcis muralis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PodMur_1.0 Primary Assembly

    Genomic

    1. NC_041327.1 Reference PodMur_1.0 Primary Assembly

      Range
      22584799..22607708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028710917.1 → XP_028566750.1  ATP-dependent RNA helicase DDX54

      UniProtKB/TrEMBL
      A0A670KDK1, A0A670KJR6
      Related
      ENSPMRP00000034936.1, ENSPMRT00000037045.1
      Conserved Domains (3) summary
      COG0513
      Location:75 → 572
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      pfam08147
      Location:709 → 769
      DBP10CT; DBP10CT (NUC160) domain
      cd17959
      Location:100 → 304
      DEADc_DDX54; DEAD-box helicase domain of DEAD box protein 54
    Nucleotide Protein
    Heading Accession and Version

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