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    EFS embryonal Fyn-associated substrate [ Podarcis muralis (Common wall lizard) ]

    Gene ID: 114581471, updated on 11-Apr-2024

    Summary

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    Gene symbol
    EFS
    Gene description
    embryonal Fyn-associated substrate
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Podarcis muralis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
    Orthologs
    human mouse all
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    Genomic context

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    See EFS in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current PodMur_1.0 (GCF_004329235.1) 13 NC_041324.1 (49426523..49444178, complement)

    Chromosome 13 - NC_041324.1Genomic Context describing neighboring genes Neighboring gene poly(A) binding protein nuclear 1 Neighboring gene solute carrier family 22 member 17 Neighboring gene interleukin 25 Neighboring gene interleukin-25-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041324.1 Chromosome 13 Reference PodMur_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    embryonal Fyn-associated substrate

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Podarcis muralis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PodMur_1.0 Primary Assembly

    Genomic

    1. NC_041324.1 Reference PodMur_1.0 Primary Assembly

      Range
      49426523..49444178 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028701644.1 → XP_028557477.1  embryonal Fyn-associated substrate

      UniProtKB/TrEMBL
      A0A670K4B6
      Conserved Domains (2) summary
      cd11571
      Location:409 → 538
      FAT-like_EFS_C; C-terminal FAT-like Four helix bundle domain, also called DUF3513, of CAS (Crk-Associated Substrate) scaffolding protein, Embryonal Fyn-associated Substrate; a protein interaction module
      cl17036
      Location:4 → 63
      SH3; Src Homology 3 domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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