samd10a sterile alpha motif domain containing 10a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: samd10aprovided by ZNC
Official Full Name: sterile alpha motif domain containing 10aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-080204-53
See related: Ensembl:ENSDARG00000079978 AllianceGenome:ZFIN:ZDB-GENE-080204-53
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:172155
Summary: Predicted to be involved in cell surface receptor protein tyrosine kinase signaling pathway. Predicted to be active in cytoplasmic side of plasma membrane. Orthologous to human SAMD10 (sterile alpha motif domain containing 10). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 8

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (22977281..23007253)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (22956065..22985725)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in cell surface receptor protein tyrosine kinase signaling pathway	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
is_active_in cytoplasmic side of plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: sterile alpha motif domain-containing protein 10a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001110398.1 → NP_001103868.1 sterile alpha motif domain-containing protein 10a

See identical proteins and their annotated locations for NP_001103868.1

Status: PROVISIONAL

Source sequence(s)

BC154561

UniProtKB/TrEMBL

A8WG33

Related

ENSDARP00000118413.1, ENSDART00000136784.2

Conserved Domains (2) summary

cd09510
Location:86 → 144

SAM_aveugle-like; SAM domain of aveugle-like subfamily

smart00454
Location:88 → 137

SAM; Sterile alpha motif