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    oxnad1 oxidoreductase NAD-binding domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 558500, updated on 9-Dec-2024

    Summary

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    Official Symbol
    oxnad1provided by ZNC
    Official Full Name
    oxidoreductase NAD-binding domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-199
    See related
    Ensembl:ENSDARG00000062664 AllianceGenome:ZFIN:ZDB-GENE-060503-199
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-155k24.7
    Summary
    Predicted to enable oxidoreductase activity. Orthologous to human OXNAD1 (oxidoreductase NAD binding domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See oxnad1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (20274512..20294540)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (20690168..20710303)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor 2 mRNA binding protein 3 Neighboring gene glycoprotein (transmembrane) nmb Neighboring gene raftlin, lipid raft linker 1a Neighboring gene deleted in azoospermia-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    oxidoreductase NAD-binding domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110456.1 → NP_001103926.1  oxidoreductase NAD-binding domain-containing protein 1

      See identical proteins and their annotated locations for NP_001103926.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134194
      UniProtKB/Swiss-Prot
      A3KP77
      Related
      ENSDARP00000125618.1, ENSDART00000151237.2
      Conserved Domains (2) summary
      cd00322
      Location:34 → 267
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...
      COG0543
      Location:24 → 250
      Mcr1; NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      20274512..20294540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005170040.5 → XP_005170097.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005170097.1

      UniProtKB/TrEMBL
      A0A8M2BHE3, I3ISI1
      Related
      ENSDARP00000085293.5, ENSDART00000090860.7
      Conserved Domains (2) summary
      cd00322
      Location:70 → 303
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...
      COG0543
      Location:60 → 286
      Mcr1; NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]

    2. XM_005170041.5 → XP_005170098.1  oxidoreductase NAD-binding domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005170098.1

      UniProtKB/TrEMBL
      A0A8M2BHE3, I3ISI1
      Related
      ENSDARP00000125864.1, ENSDART00000151693.3
      Conserved Domains (2) summary
      cd00322
      Location:70 → 303
      FNR_like; Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport ...
      COG0543
      Location:60 → 286
      Mcr1; NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3KP77.1 GenPept UniProtKB/Swiss-Prot:A3KP77

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