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    Lrrn4cl LRRN4 C-terminal like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690329, updated on 2-Nov-2024

    Summary

    Official Symbol
    Lrrn4clprovided by RGD
    Official Full Name
    LRRN4 C-terminal likeprovided by RGD
    Primary source
    RGD:1597359
    See related
    EnsemblRapid:ENSRNOG00000019666 AllianceGenome:RGD:1597359
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human LRRN4CL (LRRN4 C-terminal like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 20.8), Lung (RPKM 6.2) and 8 other tissues See more
    Orthologs
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    Genomic context

    See Lrrn4cl in Genome Data Viewer
    Location:
    1q43
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (215172689..215192627)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (205743580..205759879)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (225046248..225050963)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 2 Neighboring gene BSCL2 lipid droplet biogenesis associated, seipin Neighboring gene G protein subunit gamma 3 Neighboring gene UBX domain protein 1 Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    LRRN4 C-terminal-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109579.1NP_001103049.1  LRRN4 C-terminal-like protein precursor

      See identical proteins and their annotated locations for NP_001103049.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473953
      UniProtKB/TrEMBL
      A6HZV8
      Conserved Domains (1) summary
      cd00063
      Location:83162
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      215172689..215192627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039091425.2XP_038947353.1  LRRN4 C-terminal-like protein isoform X4

      Conserved Domains (1) summary
      cd00063
      Location:115193
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    2. XM_039091421.2XP_038947349.1  LRRN4 C-terminal-like protein isoform X2

      Related
      ENSRNOP00000107127.1, ENSRNOT00000125698.1
      Conserved Domains (1) summary
      cd00063
      Location:115192
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    3. XM_006231002.4XP_006231064.1  LRRN4 C-terminal-like protein isoform X1

      UniProtKB/TrEMBL
      D4A8U4
      Conserved Domains (1) summary
      cd00063
      Location:115194
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    4. XM_039091424.2XP_038947352.1  LRRN4 C-terminal-like protein isoform X3

      UniProtKB/TrEMBL
      A6HZV8
      Conserved Domains (1) summary
      cd00063
      Location:83162
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...