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    LOC113670388 calcium-regulated heat-stable protein 1-like [ Pocillopora damicornis ]

    Gene ID: 113670388, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC113670388
    Gene description
    calcium-regulated heat-stable protein 1-like
    Locus tag
    pdam_00004525
    See related
    EnsemblRapid:LOC113670388
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pocillopora damicornis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Pocilloporidae; Pocillopora
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    Genomic context

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    See LOC113670388 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current ASM370409v1 (GCF_003704095.1) Unplaced Scaffold NW_020844984.1 (457063..462246, complement)

    NW_020844984.1Genomic Context describing neighboring genes Neighboring gene somatostatin receptor type 3-like Neighboring gene G-protein coupled receptor GRL101-like Neighboring gene sorting nexin-29-like Neighboring gene uncharacterized LOC113670387

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020844984 Unplaced Scaffold Reference ASM370409v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-regulated heat-stable protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pocillopora damicornis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM370409v1 Primary Assembly

    Genomic

    1. NW_020844984.1 Reference ASM370409v1 Primary Assembly

      Range
      457063..462246 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027186529.1 → XP_027042330.1  calcium-regulated heat-stable protein 1-like

      UniProtKB/TrEMBL
      A0A3M6V2E1
      Related
      XP_027042330.1, XM_027186529.1
      Conserved Domains (1) summary
      cd04458
      Location:71 → 136
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

    2. XM_027186530.1 → XP_027042331.1  calcium-regulated heat-stable protein 1-like

      UniProtKB/TrEMBL
      A0A3M6V2E1
      Related
      XP_027042331.1, XM_027186530.1
      Conserved Domains (1) summary
      cd04458
      Location:71 → 136
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
    Nucleotide Protein
    Heading Accession and Version

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