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    pre-mRNA cleavage complex II protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833989, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pre-mRNA cleavage complex II protein
    Primary source
    TAIR:AT5G39920
    Locus tag
    AT5G39920
    See related
    Araport:AT5G39920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MYH19.80; MYH19_80
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (15982173..15983136, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Small GTP-binding protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene CLP1-similar protein 5 Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene thioredoxin 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123355.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pre-mRNA cleavage complex II protein
    NP_198808.1
    • CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP1-similar protein 5 (TAIR:AT5G39930.1); Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15982173..15983136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123355.2 → NP_198808.1  pre-mRNA cleavage complex II protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198808.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y9F9, A0A654G7I7, F4KFW6
      Conserved Domains (1) summary
      pfam06807
      Location:64 → 105
      Clp1; Pre-mRNA cleavage complex II protein Clp1
    Nucleotide Protein
    Heading Accession and Version

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