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    Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831403, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ankyrin repeat family protein
    Primary source
    TAIR:AT5G15500
    Locus tag
    AT5G15500
    See related
    Araport:AT5G15500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20K14.110; T20K14_110
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (5031648..5033540, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2-type zinc finger family protein Neighboring gene UDP-glucose 6-dehydrogenase family protein Neighboring gene TPX2 (targeting protein for Xklp2) protein family Neighboring gene Ribosomal protein S19e family protein Neighboring gene biotin carboxyl carrier protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121554.3
    NM_180494.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ankyrin repeat family protein
    NP_197054.1
    • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G10720.1); Has 18283 Blast hits to 10029 proteins in 436 species: Archae - 21; Bacteria - 1142; Metazoa - 9586; Fungi - 1012; Plants - 1920; Viruses - 51; Other Eukaryotes - 4551 (source: NCBI BLink).
    NP_850825.1
    • Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G10720.1); Has 5035 Blast hits to 3438 proteins in 197 species: Archae - 6; Bacteria - 200; Metazoa - 919; Fungi - 164; Plants - 868; Viruses - 22; Other Eukaryotes - 2856 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5031648..5033540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121554.3 → NP_197054.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197054.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G195, Q9LF32
      Conserved Domains (3) summary
      COG0666
      Location:36 → 248
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:139 → 187
      ANK; ANK repeat [structural motif]
      pfam13962
      Location:287 → 383
      PGG; Domain of unknown function

    2. NM_180494.2 → NP_850825.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850825.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3E7H2
      Conserved Domains (4) summary
      cd00204
      Location:1 → 133
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:4 → 115
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:181 → 277
      PGG; Domain of unknown function
      sd00045
      Location:33 → 81
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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