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    CSLC6 Cellulose-synthase-like C6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819921, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CSLC6
    Official Full Name
    Cellulose-synthase-like C6
    Primary source
    TAIR:AT3G07330
    Locus tag
    AT3G07330
    See related
    Araport:AT3G07330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCSLC06; ATCSLC6; CELLULOSE-SYNTHASE LIKE C6; Cellulose-synthase-like C6; CSLC06
    Summary
    encodes a gene similar to cellulose synthase
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    Genomic context

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    See CSLC6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2335612..2339168, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phosphoserine aminotransferase, putative (DUF760) Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene miscRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The synthesis of xyloglucan, an abundant plant cell wall polysaccharide, requires CSLC function. Kim SJ, et al. Proc Natl Acad Sci U S A, 2020 Aug 18. PMID 32737163, Free PMC Article
    2. A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Boavida LC, et al. Genetics, 2009 Apr. PMID 19237690, Free PMC Article
    3. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    4. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337702.1
    NM_111612.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulose synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables glycosyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plant organ development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen tube development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in Golgi trans cisterna HDA PubMed 
    located_in endosome HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    Cellulose-synthase-like C6
    NP_187389.1
    • Cellulose-synthase-like C6 (CSLC6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen tube development; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Glycosyl transferase family 2 protein (TAIR:AT2G24630.1); Has 4986 Blast hits to 4983 proteins in 1463 species: Archae - 182; Bacteria - 3875; Metazoa - 9; Fungi - 97; Plants - 510; Viruses - 14; Other Eukaryotes - 299 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2335612..2339168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111612.4 → NP_187389.1  Cellulose-synthase-like C6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187389.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SRT3
      UniProtKB/TrEMBL
      A0A178V676, A0A654F4Y9, W8PVG2
      Conserved Domains (1) summary
      cl11394
      Location:221 → 457
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. NM_001337702.1 → NP_001326755.1  Cellulose-synthase-like C6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SRT3
      UniProtKB/TrEMBL
      A0A178V676, A0A654F4Y9, W8PVG2
      Conserved Domains (1) summary
      cl11394
      Location:221 → 457
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SRT3.1

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