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    Glycosyl hydrolases family 31 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823737, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glycosyl hydrolases family 31 protein
    Primary source
    TAIR:AT3G45940
    Locus tag
    AT3G45940
    See related
    Araport:AT3G45940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (16886226..16889171, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Histone superfamily protein Neighboring gene tRNA-Val Neighboring gene Pre-mRNA splicing Prp18-interacting factor Neighboring gene tRNA-Val

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114463.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-D-xyloside xylohydrolase IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Glycosyl hydrolases family 31 protein
    NP_190180.1
    • Glycosyl hydrolases family 31 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, pedicel, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-xylosidase 1 (TAIR:AT1G68560.1); Has 5440 Blast hits to 5077 proteins in 1113 species: Archae - 86; Bacteria - 3115; Metazoa - 813; Fungi - 823; Plants - 272; Viruses - 2; Other Eukaryotes - 329 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16886226..16889171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114463.1 → NP_190180.1  Glycosyl hydrolases family 31 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190180.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J6T7, Q9LZT7
      UniProtKB/TrEMBL
      A0A5S9XIQ3, A0A654FD60
      Conserved Domains (3) summary
      cd14752
      Location:162 → 280
      GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
      pfam16863
      Location:41 → 169
      NtCtMGAM_N; N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase
      pfam01055
      Location:261 → 707
      Glyco_hydro_31; Glycosyl hydrolases family 31
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J6T7.1

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