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    SBP3 selenium-binding protein 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821962, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SBP3
    Official Full Name
    selenium-binding protein 3
    Primary source
    TAIR:AT3G23800
    Locus tag
    AT3G23800
    See related
    Araport:AT3G23800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    selenium-binding protein 3
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    Genomic context

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    See SBP3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (8581446..8583987)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nuclear RNA polymerase D2A Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene ralf-like 24 Neighboring gene S-adenosyl-l-homocysteine (SAH) hydrolase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Promoter analysis and functional implications of the selenium binding protein (SBP) gene family in Arabidopsis thaliana. Valassakis C, et al. J Plant Physiol, 2018 May-Jun. PMID 29574326
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338655.1
    NM_113284.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables selenium binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    selenium-binding protein 3
    NP_189022.1
    • selenium-binding protein 3 (SBP3); FUNCTIONS IN: selenium binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 1 (TAIR:AT4G14030.2); Has 910 Blast hits to 900 proteins in 207 species: Archae - 39; Bacteria - 194; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8581446..8583987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113284.3 → NP_189022.1  selenium-binding protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189022.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK38
      UniProtKB/TrEMBL
      A0A178VEQ9, A0A5S9XF33
      Conserved Domains (1) summary
      pfam05694
      Location:13 → 480
      SBP56; 56kDa selenium binding protein (SBP56)

    2. NM_001338655.1 → NP_001327897.1  selenium-binding protein 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTQ7, A0A5S9XF33
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LK38.1

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