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    XTH28 xyloglucan endotransglucosylase/hydrolase 28 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838037, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XTH28
    Official Full Name
    xyloglucan endotransglucosylase/hydrolase 28
    Primary source
    TAIR:AT1G14720
    Locus tag
    AT1G14720
    See related
    Araport:AT1G14720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATXTH28; ENDOXYLOGLUCAN TRANSFERASE A2; EXGT-A2; F10B6.12; F10B6_12; XTR2; xyloglucan endotransglucosylase/hydrolase 28; xyloglucan endotransglycosylase related 2; XYLOGLUCAN ENDOTRANSGLYCOSYLASE-RELATED PROTEIN
    Summary
    member of Glycoside Hydrolase Family 16
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    Genomic context

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    See XTH28 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (5066525..5068677, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene purple acid phosphatase 3 Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Cytochrome b561/ferric reductase transmembrane protein family Neighboring gene class I heat shock protein, putative (DUF1423)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The AtXTH28 gene, a xyloglucan endotransglucosylase/hydrolase, is involved in automatic self-pollination in Arabidopsis thaliana. Kurasawa K, et al. Plant Cell Physiol, 2009 Feb. PMID 19139039, Free PMC Article
    2. Expression of endoxyloglucan transferase genes in acaulis mutants of Arabidopsis. Akamatsu T, et al. Plant Physiol, 1999 Nov. PMID 10557219, Free PMC Article
    3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A defect in AtXTH28 led to a decrease in capability for self-pollination, probably due to inhibition of stamen filament growth.
      Title: The AtXTH28 gene, a xyloglucan endotransglucosylase/hydrolase, is involved in automatic self-pollination in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101341.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within fruit development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within stamen filament development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase/hydrolase 28
    NP_172925.1
    • xyloglucan endotransglucosylase/hydrolase 28 (XTH28); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: fruit development, stamen filament development; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: endoxyloglucan transferase A3 (TAIR:AT2G01850.1); Has 2041 Blast hits to 2031 proteins in 289 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 395; Plants - 1341; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5066525..5068677 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101341.4 → NP_172925.1  xyloglucan endotransglucosylase/hydrolase 28 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172925.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04750, Q38909
      UniProtKB/TrEMBL
      A0A178W9E1, A0A5S9UHP0
      Conserved Domains (1) summary
      cd02176
      Location:29 → 290
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q38909.1

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