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    Hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842400, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Hydroxyproline-rich glycoprotein family protein
    Primary source
    TAIR:AT1G61080
    Locus tag
    AT1G61080
    See related
    Araport:AT1G61080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7P1.21; T7P1_21
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (22492878..22497267, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 1,3-beta-glucan synthase component (DUF1218) Neighboring gene low-molecular-weight cysteine-rich 66 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Hydroxyproline-rich glycoprotein family protein
    NP_176303.1
    • Hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 309070 Blast hits to 105260 proteins in 2835 species: Archae - 563; Bacteria - 69679; Metazoa - 122906; Fungi - 37150; Plants - 37869; Viruses - 8514; Other Eukaryotes - 32389 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22492878..22497267 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333929.1 → NP_001323348.1  Hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC8, A0A1P8AWR5, A0A5S9WRE9

    2. NM_001333930.1 → NP_001323347.1  Hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC8, A0A1P8AWV2, A0A5S9WRE9

    3. NM_001333931.1 → NP_001323349.1  Hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC8, A0A1P8AWV6, A0A5S9WRE9

    4. NM_001333932.1 → NP_001323346.1  Hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC8, A0A1P8AWR9, A0A5S9WRE9

    5. NM_001333933.1 → NP_001323350.1  Hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC8, A0A1P8AWV5, A0A5S9WRE9

    6. NM_104789.2 → NP_176303.1  Hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176303.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEC8, A0A5S9WRE9, Q9C946
    Nucleotide Protein
    Heading Accession and Version

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