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    CHL1 cell adhesion molecule L1 like [ Lagenorhynchus obliquidens (Pacific white-sided dolphin) ]

    Gene ID: 113628112, updated on 15-Mar-2024

    Summary

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    Gene symbol
    CHL1
    Gene description
    cell adhesion molecule L1 like
    See related
    EnsemblRapid:ENSLOBG00000012191
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lagenorhynchus obliquidens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Lagenorhynchus
    Orthologs
    human mouse all
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    Genomic context

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    See CHL1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    100 current ASM367639v1 (GCF_003676395.1) Unplaced Scaffold NW_020837966.1 (22388332..22588004)

    NW_020837966.1Genomic Context describing neighboring genes Neighboring gene CAAX prenyl protease 1 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene contactin 6 Neighboring gene actin-related protein 2/3 complex subunit 5-like protein pseudogene Neighboring gene contactin 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020837966 Unplaced Scaffold Reference ASM367639v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in dendrite self-avoidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neural cell adhesion molecule L1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lagenorhynchus obliquidens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM367639v1 Primary Assembly

    Genomic

    1. NW_020837966.1 Reference ASM367639v1 Primary Assembly

      Range
      22388332..22588004
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027121418.1 → XP_026977219.1  neural cell adhesion molecule L1-like protein isoform X1

      Conserved Domains (9) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      smart00410
      Location:548 → 635
      IG_like; Immunoglobulin like
      cd00063
      Location:639 → 728
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:742 → 823
      fn3; Fibronectin type III domain
      pfam13882
      Location:1132 → 1217
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:468 → 535
      Ig; Immunoglobulin domain
      cd04978
      Location:372 → 446
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    2. XM_027121417.1 → XP_026977218.1  neural cell adhesion molecule L1-like protein isoform X1

      Conserved Domains (9) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      smart00410
      Location:548 → 635
      IG_like; Immunoglobulin like
      cd00063
      Location:639 → 728
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:742 → 823
      fn3; Fibronectin type III domain
      pfam13882
      Location:1132 → 1217
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:468 → 535
      Ig; Immunoglobulin domain
      cd04978
      Location:372 → 446
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    3. XM_027121420.1 → XP_026977221.1  neural cell adhesion molecule L1-like protein isoform X3

      Conserved Domains (9) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      smart00409
      Location:548 → 635
      IG; Immunoglobulin
      cd00063
      Location:639 → 728
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:742 → 823
      fn3; Fibronectin type III domain
      pfam13882
      Location:1078 → 1163
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:468 → 535
      Ig; Immunoglobulin domain
      cd04978
      Location:372 → 446
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    4. XM_027121419.1 → XP_026977220.1  neural cell adhesion molecule L1-like protein isoform X2

      Related
      ENSLOBP00000016833.1, ENSLOBT00000018454.1
      Conserved Domains (9) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      smart00409
      Location:537 → 624
      IG; Immunoglobulin
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1206
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    5. XM_027121421.1 → XP_026977222.1  neural cell adhesion molecule L1-like protein isoform X4

      Related
      ENSLOBP00000016905.1, ENSLOBT00000018529.1
      Conserved Domains (9) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      smart00409
      Location:537 → 624
      IG; Immunoglobulin
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1067 → 1152
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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