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    RRP5 Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA) [ Scheffersomyces stipitis CBS 6054 ]

    Gene ID: 4838895, updated on 21-Dec-2023

    Summary

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    Gene symbol
    RRP5
    Gene description
    Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA)
    Locus tag
    PICST_83216
    Gene type
    protein coding
    RNA name
    Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA)
    RefSeq status
    PROVISIONAL
    Organism
    Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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    Genomic context

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    See RRP5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_009044.1 (739164..744437, complement)

    Chromosome 4 - NC_009044.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene GATA-family of DNA binding proteins-like protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009044.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA)
    XP_001384440.2
    • Rrp5p is the only ribosomal RNA processing trans-acting factor that is required for the synthesis of both 18S and 5.8S rRNAs
      go_function RNA binding
      go_function RNA binding

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009044.1 Reference assembly

      Range
      739164..744437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001384403.1 → XP_001384440.2  Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA) [Scheffersomyces stipitis CBS 6054]

      See identical proteins and their annotated locations for XP_001384440.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A3LTH8
      Conserved Domains (10) summary
      smart00316
      Location:684 → 756
      S1; Ribosomal protein S1-like RNA-binding domain
      COG0457
      Location:1433 → 1699
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      COG0539
      Location:314 → 848
      RpsA; Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
      cd05693
      Location:96 → 223
      S1_Rrp5_repeat_hs1_sc1; S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats ...
      cd05702
      Location:881 → 950
      S1_Rrp5_repeat_hs11_sc8; S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats ...
      cd05703
      Location:988 → 1060
      S1_Rrp5_repeat_hs12_sc9; S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats ...
      cd05706
      Location:1069 → 1141
      S1_Rrp5_repeat_sc10; S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in ...
      cd05707
      Location:1159 → 1225
      S1_Rrp5_repeat_sc11; S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in ...
      TIGR00717
      Location:683 → 1227
      rpsA; ribosomal protein S1
      cl09927
      Location:1246 → 1322
      S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
    Nucleotide Protein
    Heading Accession and Version

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