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    SOD2.2 Cu/Zn superoxide dismutase [ Scheffersomyces stipitis CBS 6054 ]

    Gene ID: 4836692, updated on 21-Dec-2023

    Summary

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    Gene symbol
    SOD2.2
    Gene description
    Cu/Zn superoxide dismutase
    Locus tag
    PICST_40471
    Gene type
    protein coding
    RNA name
    Cu/Zn superoxide dismutase
    RefSeq status
    PROVISIONAL
    Organism
    Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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    Genomic context

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    See SOD2.2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_009042.1 (61979..62623, complement)

    Chromosome 2 - NC_009042.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase I alpha subunit Neighboring gene hypothetical protein Neighboring gene Triglyceride lipase-cholesterol esterase Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009042.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables superoxide dismutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in removal of superoxide radicals IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    Cu/Zn superoxide dismutase
    XP_001382774.2
    • go_funtion copper, zinc superoxide dismutase activity; metal ion binding
      go_process superoxide metabolism

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009042.1 Reference assembly

      Range
      61979..62623 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001382737.1 → XP_001382774.2  Cu/Zn superoxide dismutase [Scheffersomyces stipitis CBS 6054]

      See identical proteins and their annotated locations for XP_001382774.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A3LMU2
      Conserved Domains (1) summary
      pfam00080
      Location:40 → 168
      Sod_Cu; Copper/zinc superoxide dismutase (SODC)
    Nucleotide Protein
    Heading Accession and Version

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