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    AGGF1 angiogenic factor with G-patch and FHA domains 1 [ Zonotrichia albicollis (white-throated sparrow) ]

    Gene ID: 102072478, updated on 3-Aug-2024

    Summary

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    Gene symbol
    AGGF1
    Gene description
    angiogenic factor with G-patch and FHA domains 1
    See related
    Ensembl:ENSZALG00000016565
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zonotrichia albicollis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
    Orthologs
    human mouse all
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    Genomic context

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    See AGGF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081599.1 (3910663..3932967)

    NW_005081599.1Genomic Context describing neighboring genes Neighboring gene S100 calcium binding protein Z Neighboring gene corticotropin releasing hormone binding protein Neighboring gene small nucleolar RNA SNORA47 Neighboring gene phosphodiesterase 8B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005081599 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    angiogenic factor with G patch and FHA domains 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zonotrichia_albicollis-1.0.1

    Genomic

    1. NW_005081599.1 Reference Zonotrichia_albicollis-1.0.1

      Range
      3910663..3932967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026794326.1 → XP_026650127.1  angiogenic factor with G patch and FHA domains 1 isoform X3

      Conserved Domains (3) summary
      cd00060
      Location:314 → 420
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd16164
      Location:191 → 244
      OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins
      cl02611
      Location:521 → 565
      G-patch; G-patch domain

    2. XM_014268000.2 → XP_014123475.1  angiogenic factor with G patch and FHA domains 1 isoform X1

      Conserved Domains (4) summary
      COG1716
      Location:425 → 510
      FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
      cd00060
      Location:408 → 514
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd16164
      Location:191 → 244
      OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins
      cl02611
      Location:615 → 659
      G-patch; G-patch domain

    3. XM_014268001.2 → XP_014123476.1  angiogenic factor with G patch and FHA domains 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D2QJW3
      Related
      ENSZALP00000021126.1, ENSZALT00000027598.1
      Conserved Domains (4) summary
      COG1716
      Location:388 → 473
      FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
      cd00060
      Location:371 → 477
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd16164
      Location:154 → 207
      OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins
      cl02611
      Location:578 → 622
      G-patch; G-patch domain
    Nucleotide Protein
    Heading Accession and Version

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