U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    BRD1 bromodomain containing 1 [ Pseudonaja textilis ]

    Gene ID: 113445104, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    BRD1
    Gene description
    bromodomain containing 1
    See related
    Ensembl:ENSPTXG00000006039
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pseudonaja textilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Elapidae; Acanthophiinae; Pseudonaja
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BRD1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current EBS10Xv2-PRI (GCF_900518735.1) Unplaced Scaffold NW_020769374.1 (4742357..4790261)

    NW_020769374.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113445058 Neighboring gene ALG12 alpha-1,6-mannosyltransferase Neighboring gene zinc finger BED-type containing 4 Neighboring gene uncharacterized LOC113445072

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_020769374 Unplaced Scaffold Reference EBS10Xv2-PRI

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MOZ/MORF histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    bromodomain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Pseudonaja textilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EBS10Xv2-PRI

    Genomic

    1. NW_020769374.1 Reference EBS10Xv2-PRI

      Range
      4742357..4790261
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026714108.1 → XP_026569893.1  bromodomain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A670YBF2
      Related
      ENSPTXP00000008353.1, ENSPTXT00000008643.1
      Conserved Domains (4) summary
      cd05839
      Location:1054 → 1169
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:565 → 662
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      cl26518
      Location:10 → 575
      EPL1; Enhancer of polycomb-like

    2. XM_026714107.1 → XP_026569892.1  bromodomain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A670YBF2
      Conserved Domains (4) summary
      cd05839
      Location:1054 → 1169
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:565 → 662
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      cl26518
      Location:10 → 575
      EPL1; Enhancer of polycomb-like

    3. XM_026714109.1 → XP_026569894.1  bromodomain-containing protein 1 isoform X2

      Conserved Domains (4) summary
      cd05839
      Location:926 → 1041
      BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
      cd05512
      Location:565 → 662
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      cl26518
      Location:10 → 575
      EPL1; Enhancer of polycomb-like

    4. XM_026714110.1 → XP_026569895.1  bromodomain-containing protein 1 isoform X3

      Conserved Domains (3) summary
      cd05512
      Location:565 → 662
      Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
      cd15702
      Location:271 → 388
      ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
      cl26518
      Location:10 → 575
      EPL1; Enhancer of polycomb-like
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.