akirin1.S akirin 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: akirin1.S
Official Full Name: akirin 1 S homeolog
Primary source: Xenbase:XB-GENE-5820134
Locus tag: XELAEV_18003211mg
See related: AllianceGenome:Xenbase:XB-GENE-5820134
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: strf2; akirin1; akirin1-a
Summary: Predicted to enable transcription coregulator activity. Predicted to act upstream of or within positive regulation of myoblast differentiation and positive regulation of transcription by RNA polymerase II. Predicted to be located in chromatin and nucleus. Orthologous to human AKIRIN1 (akirin 1). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 2S

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (71334885..71345146, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	Unplaced Scaffold	NW_016694834.1 (1079261..1089540, complement)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within positive regulation of myoblast differentiation	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: akirin-1A

Names: uncharacterized protein C1orf108 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095776.1 → NP_001089245.1 akirin-1A

See identical proteins and their annotated locations for NP_001089245.1

Status: PROVISIONAL

Source sequence(s)

BC089268

UniProtKB/Swiss-Prot

Q5FWN7

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

71334885..71345146 complement

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GenBank, FASTA, Sequence Viewer (Graphics)