U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    Agtpbp1 ATP/GTP binding carboxypeptidase 1 [ Urocitellus parryii (Arctic ground squirrel) ]

    Gene ID: 113198030, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Agtpbp1
    Gene description
    ATP/GTP binding carboxypeptidase 1
    See related
    Ensembl:ENSUPAG00010012551
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Urocitellus parryii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Agtpbp1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540353.1 (51894..220611)

    NW_020540353.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha-1B chain-like Neighboring gene neurotrophic receptor tyrosine kinase 2 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_020540353 Unplaced Scaffold Reference ASM342692v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metallocarboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in C-terminal protein deglutamylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein side chain deglutamylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytosolic carboxypeptidase 1
    Names
    ATP/GTP binding protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM342692v1

    Genomic

    1. NW_020540353.1 Reference ASM342692v1

      Range
      51894..220611
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026410616.1 → XP_026266401.1  cytosolic carboxypeptidase 1 isoform X6

      UniProtKB/TrEMBL
      A0A8D2HMK0
      Conserved Domains (1) summary
      cd06906
      Location:906 → 1183
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    2. XM_026410611.1 → XP_026266396.1  cytosolic carboxypeptidase 1 isoform X1

      UniProtKB/TrEMBL
      A0A8D2HMK0
      Conserved Domains (1) summary
      cd06906
      Location:881 → 1158
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    3. XM_026410613.1 → XP_026266398.1  cytosolic carboxypeptidase 1 isoform X3

      UniProtKB/TrEMBL
      A0A8D2HMK0, A0A8D2HQ21
      Related
      ENSUPAP00010015798.1, ENSUPAT00010018038.1
      Conserved Domains (1) summary
      cd06906
      Location:859 → 1136
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    4. XM_026410615.1 → XP_026266400.1  cytosolic carboxypeptidase 1 isoform X5

      UniProtKB/TrEMBL
      A0A8D2HMH6
      Related
      ENSUPAP00010015826.1, ENSUPAT00010018069.1
      Conserved Domains (1) summary
      cl11393
      Location:881 → 1114
      Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

    5. XM_026410614.1 → XP_026266399.1  cytosolic carboxypeptidase 1 isoform X4

      UniProtKB/TrEMBL
      A0A8D2HMK0
      Conserved Domains (1) summary
      cd06906
      Location:881 → 1158
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    6. XM_026410612.1 → XP_026266397.1  cytosolic carboxypeptidase 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D2HMK0
      Related
      ENSUPAP00010015862.1, ENSUPAT00010018111.1
      Conserved Domains (1) summary
      cd06906
      Location:877 → 1154
      M14_Nna1; Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

    RNA

    1. XR_003302792.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.