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    LOC11430234 probable serine/threonine-protein kinase PIX13 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11430234, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11430234
    Gene description
    probable serine/threonine-protein kinase PIX13
    Locus tag
    MtrunA17_Chr5g0448661
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11430234 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (44647467..44649597, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (43455031..43457187, complement)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene protein NLP5 Neighboring gene NPC intracellular cholesterol transporter 1 Neighboring gene uncharacterized LOC112421902 Neighboring gene epidermal growth factor receptor substrate 15-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable serine/threonine-protein kinase PIX13
    Names
    Serine/Threonine kinase family protein
    putative transferase, protein kinase RLK-Pelle-RLCK-VIIa-2 family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      44647467..44649597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003618066.4 → XP_003618114.1  probable serine/threonine-protein kinase PIX13

      See identical proteins and their annotated locations for XP_003618114.1

      UniProtKB/TrEMBL
      G7KFF5, G7KFF6
      Conserved Domains (1) summary
      cd14066
      Location:111 → 385
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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