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    LOC11406578 uncharacterized LOC11406578 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11406578, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC11406578
    Gene description
    uncharacterized LOC11406578
    Locus tag
    MtrunA17_Chr8g0393331
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11406578 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (49683395..49687471, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (45548403..45552452, complement)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112417030 Neighboring gene putative D-cysteine desulfhydrase 1, mitochondrial Neighboring gene uncharacterized LOC120577425 Neighboring gene uncharacterized LOC120577417 Neighboring gene pentatricopeptide repeat-containing protein At3g16610 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC11406578

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      49683395..49687471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024772743.2 → XP_024628511.1  uncharacterized protein LOC11406578 isoform X1

      UniProtKB/TrEMBL
      A0A072TVA8, A0A396GS26
      Conserved Domains (1) summary
      pfam14383
      Location:296 → 315
      VARLMGL; DUF761-associated sequence motif

    2. XM_003631106.4 → XP_003631154.1  uncharacterized protein LOC11406578 isoform X2

      See identical proteins and their annotated locations for XP_003631154.1

      UniProtKB/TrEMBL
      A0A072TVA8, G7LE98
      Conserved Domains (1) summary
      pfam14383
      Location:295 → 314
      VARLMGL; DUF761-associated sequence motif
    Nucleotide Protein
    Heading Accession and Version

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