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    GSPATT00036565001 uncharacterized protein [ Paramecium tetraurelia ]

    Gene ID: 5020967, updated on 23-Nov-2023

    Summary

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    Gene symbol
    GSPATT00036565001
    Gene description
    uncharacterized protein
    Locus tag
    GSPATT00036565001
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Paramecium tetraurelia (strain: Stock d4-2)
    Lineage
    Eukaryota; Sar; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium
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    Genomic context

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    See GSPATT00036565001 in Genome Data Viewer
    Location:
    chromosome: undetermined
    Exon count:
    2

    NW_001799024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001799024.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Aury JM, et al. Nature, 2006 Nov 9. PMID 17086204
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001799024.1 Reference assembly

      Range
      97068..99604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001435145.1 → XP_001435182.1  uncharacterized protein GSPATT00036565001 [Paramecium tetraurelia]

      See identical proteins and their annotated locations for XP_001435182.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0CAG8
      Conserved Domains (6) summary
      cd01885
      Location:20 → 224
      EF2; Elongation Factor 2 (EF2) in archaea and eukarya
      cd01681
      Location:552 → 724
      aeEF2_snRNP_like_IV; This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, ...
      cd04096
      Location:720 → 799
      eEF2_snRNP_like_C; eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart ...
      PTZ00416
      Location:1 → 836
      PTZ00416; elongation factor 2; Provisional
      cd16268
      Location:371 → 465
      EF2_II; Domain II of Elongation Factor 2
      cd16261
      Location:481 → 552
      EF2_snRNP_III; Domain III of Elongation Factor 2 (EF2)
    Nucleotide Protein
    Heading Accession and Version

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