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    tropomyosin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820258, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tropomyosin
    Primary source
    TAIR:AT3G10880
    Locus tag
    AT3G10880
    See related
    Araport:AT3G10880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (3405800..3407921)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Metallo-hydrolase/oxidoreductase superfamily protein Neighboring gene Cytochrome b-c1 complex, subunit 8 protein Neighboring gene methyl esterase 17 Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337903.1
    NM_111925.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tropomyosin
    NP_187699.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05180.1); Has 15699 Blast hits to 11378 proteins in 1134 species: Archae - 391; Bacteria - 2054; Metazoa - 6851; Fungi - 1354; Plants - 1096; Viruses - 119; Other Eukaryotes - 3834 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3405800..3407921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337902.1 → NP_001327510.1  tropomyosin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBK7, A0A384L851, A0A7G2EP10, Q58FW3
      Conserved Domains (1) summary
      TIGR02169
      Location:148 → 310
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    2. NM_001337901.1 → NP_001327511.1  tropomyosin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSJ2, A0A5S9XB57, Q9SG93
      Conserved Domains (1) summary
      TIGR02169
      Location:110 → 272
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    3. NM_111925.4 → NP_187699.2  tropomyosin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187699.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VBK7, A0A384L851, A0A7G2EP10, Q58FW3
      Conserved Domains (1) summary
      TIGR02169
      Location:148 → 310
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    4. NM_001337903.1 → NP_001327509.1  tropomyosin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSJ2, A0A5S9XB57, Q9SG93
      Conserved Domains (1) summary
      TIGR02169
      Location:110 → 272
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    Nucleotide Protein
    Heading Accession and Version

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