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    Histone superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830164, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Histone superfamily protein
    Primary source
    TAIR:AT4G40030
    Locus tag
    AT4G40030
    See related
    Araport:AT4G40030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    H3.3; histone 3.3; T5J17.200; T5J17_200
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (18555532..18557106, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Myosin heavy chain-related protein Neighboring gene Histone superfamily protein Neighboring gene Microsomal signal peptidase 12 kDa subunit (SPC12)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana. Wollmann H, et al. Genome Biol, 2017 May 18. PMID 28521766, Free PMC Article
    2. Delineation of metabolic gene clusters in plant genomes by chromatin signatures. Yu N, et al. Nucleic Acids Res, 2016 Mar 18. PMID 26895889, Free PMC Article
    3. Mechanism of DNA methylation-directed histone methylation by KRYPTONITE. Du J, et al. Mol Cell, 2014 Aug 7. PMID 25018018, Free PMC Article
    4. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Jacob Y, et al. Nat Struct Mol Biol, 2009 Jul. PMID 19503079, Free PMC Article
    5. PRMT11: a new Arabidopsis MBD7 protein partner with arginine methyltransferase activity. Scebba F, et al. Plant J, 2007 Oct. PMID 17711414

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085047.2
    NM_001085048.2
    NM_001342564.1
    NM_120167.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Histone superfamily protein
    NP_001078516.1
    • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14638 Blast hits to 14630 proteins in 7251 species: Archae - 0; Bacteria - 0; Metazoa - 10605; Fungi - 2037; Plants - 1272; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).
    NP_001078517.1
    • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).
    NP_195713.1
    • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18555532..18557106 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120167.4 → NP_195713.1  Histone superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195713.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P59169, Q6NR95
      UniProtKB/TrEMBL
      A0A178UM09, A0A384KRT1, A0A5S9WUL8, A0A654EQW3, B9DGR9
      Conserved Domains (1) summary
      PTZ00018
      Location:1 → 136
      PTZ00018; histone H3; Provisional

    2. NM_001085047.2 → NP_001078516.1  Histone superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078516.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WUL8, A0A654EQW3, A0A654FX83, A8MRL0
      Conserved Domains (1) summary
      PTZ00018
      Location:29 → 164
      PTZ00018; histone H3; Provisional

    3. NM_001085048.2 → NP_001078517.1  Histone superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078517.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P59169, Q6NR95
      UniProtKB/TrEMBL
      A0A178UM09, A0A384KRT1, A0A5S9WUL8, A0A654EQW3, B9DGR9
      Conserved Domains (1) summary
      PTZ00018
      Location:1 → 136
      PTZ00018; histone H3; Provisional

    4. NM_001342564.1 → NP_001328124.1  Histone superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P59169, Q6NR95
      UniProtKB/TrEMBL
      A0A178UM09, A0A384KRT1, A0A5S9WUL8, A0A654EQW3, B9DGR9
      Conserved Domains (1) summary
      PTZ00018
      Location:1 → 136
      PTZ00018; histone H3; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P59169.2

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