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    MCT1 MEI2 C-terminal RRM only like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840631, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MCT1
    Official Full Name
    MEI2 C-terminal RRM only like 1
    Primary source
    TAIR:AT1G37140
    Locus tag
    AT1G37140
    See related
    Araport:AT1G37140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28L22.10; F28L22_10; MEI2 C-terminal RRM only like 1
    Summary
    a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.
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    Genomic context

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    See MCT1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (14170351..14172106, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nitrate reductase 2 Neighboring gene holocarboxylase synthetase 2 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An RRM-containing mei2-like MCT1 plays a negative role in the seed germination and seedling growth of Arabidopsis thaliana in the presence of ABA. Gu L, et al. Plant Physiol Biochem, 2016 Dec. PMID 27771580
    2. PLASTOCHRON2 regulates leaf initiation and maturation in rice. Kawakatsu T, et al. Plant Cell, 2006 Mar. PMID 16461585, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Abscisic acid (ABA)-upregulated MCT1 plays a negative role in seed germination and seedling growth under ABA by modulating the expression of ABA signaling-related genes.
      Title: An RRM-containing mei2-like MCT1 plays a negative role in the seed germination and seedling growth of Arabidopsis thaliana in the presence of ABA.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MEI2 C-terminal RRM only like 1
    NP_001077670.1
    • MEI2 C-terminal RRM only like 1 (MCT1); CONTAINS InterPro DOMAIN/s: RNA recognition motif 2 (InterPro:IPR007201); BEST Arabidopsis thaliana protein match is: terminal EAR1-like 1 (TAIR:AT3G26120.1); Has 331 Blast hits to 331 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 29; Plants - 216; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
    NP_174902.1
    • MEI2 C-terminal RRM only like 1 (MCT1); CONTAINS InterPro DOMAIN/s: RNA recognition motif 2 (InterPro:IPR007201); BEST Arabidopsis thaliana protein match is: terminal EAR1-like 2 (TAIR:AT1G67770.1); Has 394 Blast hits to 394 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 60; Plants - 240; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      14170351..14172106 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084201.2 → NP_001077670.1  MEI2 C-terminal RRM only like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077670.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DVC8, Q1PFN8
      Conserved Domains (1) summary
      cl17169
      Location:86 → 145
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_103365.1 → NP_174902.1  MEI2 C-terminal RRM only like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174902.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DVC8, Q4PT05
      Conserved Domains (1) summary
      cd12277
      Location:86 → 176
      RRM3_MEI2_EAR1_like; RNA recognition motif 3 in Mei2-like proteins and terminal EAR1-like proteins
    Nucleotide Protein
    Heading Accession and Version

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