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    KDM4C lysine demethylase 4C [ Nothoprocta perdicaria ]

    Gene ID: 112947585, updated on 15-Mar-2024

    Summary

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    Gene symbol
    KDM4C
    Gene description
    lysine demethylase 4C
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nothoprocta perdicaria
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
    Orthologs
    human mouse all
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    Genomic context

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    See KDM4C in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455464.1 (736466..973432)

    NW_020455464.1Genomic Context describing neighboring genes Neighboring gene ubiquitin like with PHD and ring finger domains 2 Neighboring gene glycine decarboxylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020455464 Unplaced Scaffold Reference notPer1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 4C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference notPer1

    Genomic

    1. NW_020455464.1 Reference notPer1

      Range
      736466..973432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026039705.1 → XP_025895490.1  lysine-specific demethylase 4C

      Conserved Domains (6) summary
      smart00545
      Location:16 → 57
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00333
      Location:903 → 959
      TUDOR; Tudor domain
      pfam02373
      Location:177 → 293
      JmjC; JmjC domain, hydroxylase
      cd15715
      Location:781 → 890
      ePHD_JMJD2C; Extended PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      cl22851
      Location:669 → 772
      PHD_SF; PHD finger superfamily
      cl25758
      Location:395 → 637
      DUF4775; Domain of unknown function (DUF4775)

    2. XM_026039704.1 → XP_025895489.1  lysine-specific demethylase 4C

      Conserved Domains (6) summary
      smart00545
      Location:16 → 57
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00333
      Location:903 → 959
      TUDOR; Tudor domain
      pfam02373
      Location:177 → 293
      JmjC; JmjC domain, hydroxylase
      cd15715
      Location:781 → 890
      ePHD_JMJD2C; Extended PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      cl22851
      Location:669 → 772
      PHD_SF; PHD finger superfamily
      cl25758
      Location:395 → 637
      DUF4775; Domain of unknown function (DUF4775)

    3. XM_026039706.1 → XP_025895491.1  lysine-specific demethylase 4C

      Conserved Domains (6) summary
      smart00545
      Location:16 → 57
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00333
      Location:903 → 959
      TUDOR; Tudor domain
      pfam02373
      Location:177 → 293
      JmjC; JmjC domain, hydroxylase
      cd15715
      Location:781 → 890
      ePHD_JMJD2C; Extended PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      cl22851
      Location:669 → 772
      PHD_SF; PHD finger superfamily
      cl25758
      Location:395 → 637
      DUF4775; Domain of unknown function (DUF4775)
    Nucleotide Protein
    Heading Accession and Version

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