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    ATXN1 ataxin 1 [ Vulpes vulpes (red fox) ]

    Gene ID: 112920526, updated on 15-Mar-2024

    Summary

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    Gene symbol
    ATXN1
    Gene description
    ataxin 1
    See related
    Ensembl:ENSVVUG00000003386
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vulpes vulpes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
    Orthologs
    human mouse all
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    Genomic context

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    See ATXN1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356465.1 (8492386..8899120)

    NW_020356465.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112920455 Neighboring gene U6 spliceosomal RNA Neighboring gene peptidyl-prolyl cis-trans isomerase A pseudogene Neighboring gene guanosine monophosphate reductase Neighboring gene myosin regulatory light chain interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020356465 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ataxin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VulVul2.2 Primary Assembly

    Genomic

    1. NW_020356465.1 Reference VulVul2.2 Primary Assembly

      Range
      8492386..8899120
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025999331.1 → XP_025855116.1  ataxin-1

      UniProtKB/TrEMBL
      A0A3Q7SIE3
      Conserved Domains (4) summary
      smart00536
      Location:572 → 687
      AXH; domain in Ataxins and HMG containing proteins
      pfam12547
      Location:395 → 444
      ATXN-1_C; Capicua transcriptional repressor modulator
      cl25764
      Location:89 → 256
      PAT1; Topoisomerase II-associated protein PAT1
      cl26464
      Location:13 → 355
      Atrophin-1; Atrophin-1 family

    2. XM_025999330.1 → XP_025855115.1  ataxin-1

      UniProtKB/TrEMBL
      A0A3Q7SIE3
      Related
      ENSVVUP00000004297.1, ENSVVUT00000005870.1
      Conserved Domains (4) summary
      smart00536
      Location:572 → 687
      AXH; domain in Ataxins and HMG containing proteins
      pfam12547
      Location:395 → 444
      ATXN-1_C; Capicua transcriptional repressor modulator
      cl25764
      Location:89 → 256
      PAT1; Topoisomerase II-associated protein PAT1
      cl26464
      Location:13 → 355
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

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