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    brm ATP-dependent helicase brm [ Camponotus floridanus (Florida carpenter ant) ]

    Gene ID: 105251812, updated on 10-Oct-2024

    Summary

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    Gene symbol
    brm
    Gene description
    ATP-dependent helicase brm
    Locus tag
    EAG_07354
    See related
    EnsemblRapid:LOC105251812
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camponotus floridanus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Formicinae; Camponotus
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See brm in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current Cflo_v7.5 (GCF_003227725.1) Unplaced Scaffold NW_020229547.1 (2392510..2417645)
    101 previous assembly CamFlo_1.0 (GCF_000147175.1) Unplaced Scaffold NW_011881215.1 (839530..864789, complement)

    NW_020229547.1Genomic Context describing neighboring genes Neighboring gene C3G guanyl-nucleotide exchange factor Neighboring gene inositol monophosphatase 1 Neighboring gene inositol monophosphatase 2 Neighboring gene NADH:ubiquinone oxidoreductase subunit ASHI Neighboring gene inositol monophosphatase 2 Neighboring gene uncharacterized LOC109610037 Neighboring gene ubiquitin thioesterase otubain-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent helicase brm

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camponotus floridanus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cflo_v7.5

    Genomic

    1. NW_020229547.1 Reference Cflo_v7.5

      Range
      2392510..2417645
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011258838.3 → XP_011257140.2  ATP-dependent helicase brm isoform X1

      UniProtKB/TrEMBL
      E2AFG3
      Related
      XP_011257140.2, XM_011258838.3
      Conserved Domains (8) summary
      smart00573
      Location:990 → 1062
      HSA; domain in helicases and associated with SANT domains
      pfam07533
      Location:1136 → 1174
      BRK; BRK domain
      pfam08880
      Location:784 → 818
      QLQ
      pfam09606
      Location:288 → 765
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam14619
      Location:1792 → 1860
      SnAC; Snf2-ATP coupling, chromatin remodelling complex
      cl02556
      Location:1911 → 2018
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl25742
      Location:927 → 1109
      ERM; Ezrin/radixin/moesin family
      cl26465
      Location:1201 → 1782
      SNF2_N; SNF2 family N-terminal domain

    2. XM_011258839.3 → XP_011257141.2  ATP-dependent helicase brm isoform X1

      UniProtKB/TrEMBL
      E2AFG3
      Related
      XP_011257141.2, XM_011258839.3
      Conserved Domains (8) summary
      smart00573
      Location:990 → 1062
      HSA; domain in helicases and associated with SANT domains
      pfam07533
      Location:1136 → 1174
      BRK; BRK domain
      pfam08880
      Location:784 → 818
      QLQ
      pfam09606
      Location:288 → 765
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam14619
      Location:1792 → 1860
      SnAC; Snf2-ATP coupling, chromatin remodelling complex
      cl02556
      Location:1911 → 2018
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl25742
      Location:927 → 1109
      ERM; Ezrin/radixin/moesin family
      cl26465
      Location:1201 → 1782
      SNF2_N; SNF2 family N-terminal domain

    3. XM_011258840.3 → XP_011257142.2  ATP-dependent helicase brm isoform X2

      UniProtKB/TrEMBL
      E2AFG3
      Related
      XP_011257142.2, XM_011258840.3
      Conserved Domains (8) summary
      smart00573
      Location:990 → 1062
      HSA; domain in helicases and associated with SANT domains
      pfam07533
      Location:1136 → 1174
      BRK; BRK domain
      pfam08880
      Location:784 → 818
      QLQ
      pfam09606
      Location:288 → 765
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam14619
      Location:1784 → 1852
      SnAC; Snf2-ATP coupling, chromatin remodelling complex
      cl02556
      Location:1903 → 2010
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl25742
      Location:927 → 1109
      ERM; Ezrin/radixin/moesin family
      cl26465
      Location:1193 → 1774
      SNF2_N; SNF2 family N-terminal domain

    4. XM_011258841.3 → XP_011257143.2  ATP-dependent helicase brm isoform X3

      UniProtKB/TrEMBL
      E2AFG3
      Related
      XP_011257143.2, XM_011258841.3
      Conserved Domains (8) summary
      smart00573
      Location:953 → 1025
      HSA; domain in helicases and associated with SANT domains
      pfam07533
      Location:1099 → 1137
      BRK; BRK domain
      pfam08880
      Location:784 → 818
      QLQ
      pfam09606
      Location:288 → 765
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam14619
      Location:1755 → 1823
      SnAC; Snf2-ATP coupling, chromatin remodelling complex
      cl02556
      Location:1874 → 1981
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl25742
      Location:890 → 1072
      ERM; Ezrin/radixin/moesin family
      cl26465
      Location:1164 → 1745
      SNF2_N; SNF2 family N-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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