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    rpmE 50S ribosomal protein L31 [ Shigella dysenteriae ]

    Gene ID: 75169378, updated on 3-Dec-2024

    Summary

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    Gene symbol
    rpmE
    Gene description
    50S ribosomal protein L31
    Locus tag
    HUZ68_RS00290
    Gene type
    protein coding
    Organism
    Shigella dysenteriae (strain: SWHEFF_49)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
    Old locus tag
    HUZ68_00290
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    Genomic context

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    NZ_CP055055.1Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional regulator CytR Neighboring gene primosomal protein N' Neighboring gene rhs element protein RhsC Neighboring gene RHS element protein dsORF-f3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP055055.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Liberation of zinc-containing L31 (RpmE) from ribosomes by its paralogous gene product, YtiA, in Bacillus subtilis. Akanuma G, et al. J Bacteriol, 2006 Apr. PMID 16547061, Free PMC Article
    2. Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Makarova KS, et al. Genome Biol, 2001. PMID 11574053, Free PMC Article
    3. High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria. Che Y, et al. Microbiome, 2022 Jan 25. PMID 35078531, Free PMC Article
    4. Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome. Nanamiya H, et al. Mol Microbiol, 2004 Apr. PMID 15049826

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    50S ribosomal protein L31

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP055055.1 Reference assembly

      Range
      48122..48334
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_000710769.1 MULTISPECIES: 50S ribosomal protein L31 [Gammaproteobacteria]

      See identical proteins and their annotated locations for WP_000710769.1

      UniProtKB/Swiss-Prot
      A7ZUF1, A8A742, B1IVE3, B1LNP1, B1XBA2, B2TWD3, B5YZ77, B6I4S9, B7LA33, B7LUR8, B7M6Y7, B7MI68, B7N2S7, B7NFN5, B7NU69, B7UNQ6, C5A0A3, P02432, P0A7M9, P0A7N0, P0C076, P0C203, Q0TAC8, Q2M8N2, Q31U54, Q32AA9, Q3YV42
      UniProtKB/TrEMBL
      A0A090NC24, A0A0E0Y998, A0A0E2LCX9, A0A0H3ENQ0, A0A0H3PZ52, A0A0I9MGT4, A0A0J3WM60, A0A140SS71, A0A192CG49, A0A1Q8MCB4, A0A1X3HZV8, A0A1X3ITY1, A0A1X3J9W2, A0A200LW81, A0A2S7SHZ0, A0A2S8E8U1, A0A3T2USL6, A0A4P7TUH1, A0A4P8CB21, A0A5F1F483, A0A5F1HVW4, A0A6H2GK44, A0A6N3QJS3, A0A7U9IUK1, A0A7U9M052, A0A7W4PVC5, A0A828U1M5, A0A829L2E3, A0A836N8Z3, A0A8E0FR37, A0A9P2MME8, A0A9P2R0N4, A0A9Q6V3E9, A0AA35AGP4, A0AA36L2Q2, A0AAD2NXZ0, A0AAD2UEC2, A0AAD2VJH7, A0AAD2ZEW4, A0AAN1E138, A0AAN1SAA3, A0AAN3M7V8, A0AAN3V920, A0AAN4NPR9, A0AAP9MQK0, A0AAV3H153, A0AAV3HZZ6, C3SIV2, D3GRZ2, E0J768, E2X3B5, F4T6H2, F5P128, I6DGK1, S1NUB5, W0FVI9, W1EY26, W1X878
      Conserved Domains (1) summary
      PRK00019
      Location:1 → 70
      rpmE; 50S ribosomal protein L31; Reviewed
    Nucleotide Protein
    Heading Accession and Version