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    SEC22C SEC22 homolog C, vesicle trafficking protein [ Alligator sinensis (Chinese alligator) ]

    Gene ID: 102376546, updated on 10-Mar-2024

    Summary

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    Gene symbol
    SEC22C
    Gene description
    SEC22 homolog C, vesicle trafficking protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See SEC22C in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842173.1 (408958..442860)

    NW_005842173.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112550648 Neighboring gene zinc finger and BTB domain containing 47 Neighboring gene natural killer cell triggering receptor Neighboring gene vasoactive intestinal peptide receptor 1 Neighboring gene vasoactive intestinal polypeptide receptor 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005842173 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle-trafficking protein SEC22c
    Names
    SEC22 vesicle trafficking protein homolog C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM45574v1 Primary Assembly

    Genomic

    1. NW_005842173.1 Reference ASM45574v1 Primary Assembly

      Range
      408958..442860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025206823.1 → XP_025062608.1  vesicle-trafficking protein SEC22c isoform X2

      UniProtKB/TrEMBL
      A0A3Q0GWQ0

    2. XM_025206824.1 → XP_025062609.1  vesicle-trafficking protein SEC22c isoform X4

      UniProtKB/TrEMBL
      A0A3Q0GS42

    3. XM_006025912.3 → XP_006025974.1  vesicle-trafficking protein SEC22c isoform X1

      UniProtKB/TrEMBL
      A0A1U7RU36
      Conserved Domains (1) summary
      pfam13774
      Location:45 → 114
      Longin; Regulated-SNARE-like domain

    4. XM_014520984.2 → XP_014376470.1  vesicle-trafficking protein SEC22c isoform X3

      UniProtKB/TrEMBL
      A0A1U8DGX3
      Conserved Domains (1) summary
      pfam13774
      Location:44 → 104
      Longin; Regulated-SNARE-like domain

    5. XM_025206822.1 → XP_025062607.1  vesicle-trafficking protein SEC22c isoform X1

      UniProtKB/TrEMBL
      A0A1U7RU36
      Conserved Domains (1) summary
      pfam13774
      Location:45 → 114
      Longin; Regulated-SNARE-like domain

    6. XM_025206821.1 → XP_025062606.1  vesicle-trafficking protein SEC22c isoform X1

      UniProtKB/TrEMBL
      A0A1U7RU36
      Conserved Domains (1) summary
      pfam13774
      Location:45 → 114
      Longin; Regulated-SNARE-like domain
    Nucleotide Protein
    Heading Accession and Version

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