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    LOC112522242 clathrin interactor EPSIN 2 [ Cynara cardunculus subsp. cardunculus ]

    Gene ID: 112522242, updated on 28-Jun-2024

    Summary

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    Gene symbol
    LOC112522242
    Gene description
    clathrin interactor EPSIN 2
    Locus tag
    Ccrd_007066
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cynara cardunculus subsp. cardunculus (sub-species: cardunculus)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara
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    Genomic context

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    See LOC112522242 in Genome Data Viewer
    Location:
    chromosome: LG 11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current CcrdV1 (GCF_001531365.1) LG 11 NC_037538.1 (1362243..1371559, complement)

    Chromosome LG 11 - NC_037538.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member F1-like Neighboring gene 2,3-dimethylmalate lyase Neighboring gene mitochondrial import inner membrane translocase subunit PAM16 like 2-like Neighboring gene uncharacterized LOC112521455

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037538.1 Chromosome LG 11 Reference CcrdV1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clathrin interactor EPSIN 2
    Names
    ENTH/VHS-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cynara cardunculus subsp. cardunculus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CcrdV1

    Genomic

    1. NC_037538.1 Reference CcrdV1

      Range
      1362243..1371559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025131350.1 → XP_024987118.1  clathrin interactor EPSIN 2 isoform X2

      UniProtKB/TrEMBL
      A0A103XHP9
      Conserved Domains (3) summary
      cd03571
      Location:26 → 147
      ENTH_epsin; ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated ...
      pfam08648
      Location:182 → 272
      DUF1777; Protein of unknown function (DUF1777)
      cl25764
      Location:493 → 671
      PAT1; Topoisomerase II-associated protein PAT1

    2. XM_025131349.1 → XP_024987117.1  clathrin interactor EPSIN 2 isoform X1

      UniProtKB/TrEMBL
      A0A103XHP9
      Conserved Domains (3) summary
      cd03571
      Location:26 → 147
      ENTH_epsin; ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated ...
      pfam08648
      Location:182 → 272
      DUF1777; Protein of unknown function (DUF1777)
      cl25764
      Location:512 → 690
      PAT1; Topoisomerase II-associated protein PAT1
    Nucleotide Protein
    Heading Accession and Version

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