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    SP3 Sp3 transcription factor [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

    Gene ID: 112391484, updated on 15-Mar-2024

    Summary

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    Gene symbol
    SP3
    Gene description
    Sp3 transcription factor
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
    Orthologs
    human mouse all
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    Genomic context

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    See SP3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020175831.1 (1769931..1872366, complement)

    NW_020175831.1Genomic Context describing neighboring genes Neighboring gene cell division cycle associated 7 Neighboring gene DNA replication complex GINS protein PSF2 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene SERTA domain-containing protein 1-like Neighboring gene oligosaccharyltransferase complex subunit OSTC pseudogene Neighboring gene Obg like ATPase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020175831 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor Sp3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Genomic

    1. NW_020175831.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

      Range
      1769931..1872366 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024732844.1 → XP_024588612.1  transcription factor Sp3

      UniProtKB/TrEMBL
      A0A341AHK9
      Conserved Domains (4) summary
      sd00017
      Location:954 → 976
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1012 → 1034
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:998 → 1021
      zf-H2C2_2; Zinc-finger double domain
      cl26464
      Location:68 → 312
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

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