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    SNX16 sorting nexin 16 [ Terrapene triunguis (Three-toed box turtle) ]

    Gene ID: 112109397, updated on 28-Nov-2024

    Summary

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    Gene symbol
    SNX16
    Gene description
    sorting nexin 16
    See related
    Ensembl:ENSTMTG00000006437
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Terrapene triunguis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
    Orthologs
    human mouse all
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    Genomic context

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    See SNX16 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664409.1 (65259737..65297619, complement)
    100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019960500.1 (221019..264465, complement)

    NW_020664409.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1-type containing 1 Neighboring gene charged multivesicular body protein 4C Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene ETS domain-containing protein Elk-4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in early endosome to late endosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome to lysosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T_m_triunguis-2.0

    Genomic

    1. NW_020664409.1 Reference T_m_triunguis-2.0

      Range
      65259737..65297619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024203900.3 → XP_024059668.1  sorting nexin-16

      UniProtKB/TrEMBL
      A0A674IKX0
      Related
      ENSTMTP00000008793.1, ENSTMTT00000009092.1
      Conserved Domains (2) summary
      cd07276
      Location:105 → 214
      PX_SNX16; The phosphoinositide binding Phox Homology domain of Sorting Nexin 16
      TIGR04523
      Location:231 → 275
      Mplasa_alph_rch; helix-rich Mycoplasma protein

    2. XM_024203906.3 → XP_024059674.1  sorting nexin-16

      UniProtKB/TrEMBL
      A0A674IKX0
      Conserved Domains (2) summary
      cd07276
      Location:105 → 214
      PX_SNX16; The phosphoinositide binding Phox Homology domain of Sorting Nexin 16
      TIGR04523
      Location:231 → 275
      Mplasa_alph_rch; helix-rich Mycoplasma protein

    3. XM_024203904.3 → XP_024059672.1  sorting nexin-16

      UniProtKB/TrEMBL
      A0A674IKX0
      Conserved Domains (2) summary
      cd07276
      Location:105 → 214
      PX_SNX16; The phosphoinositide binding Phox Homology domain of Sorting Nexin 16
      TIGR04523
      Location:231 → 275
      Mplasa_alph_rch; helix-rich Mycoplasma protein
    Nucleotide Protein
    Heading Accession and Version

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