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    LOC106154960 PRKCA-binding protein [ Lingula anatina ]

    Gene ID: 106154960, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106154960
    Gene description
    PRKCA-binding protein
    See related
    EnsemblRapid:LOC106154960
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106154960 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775943.1 (10..16050, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013581011.1 (10..15971, complement)

    NW_019775943.1Genomic Context describing neighboring genes Neighboring gene low-density lipoprotein receptor-related protein-like Neighboring gene neurobeachin-like protein 1 Neighboring gene rRNA methyltransferase 2, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase C binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in dendritic spine maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of receptor internalization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in receptor clustering IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PRKCA-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775943.1 Reference LinAna2.0 Primary Assembly

      Range
      10..16050 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024074289.1 → XP_023930057.1  PRKCA-binding protein isoform X5

      UniProtKB/TrEMBL
      A0A2R2MIK4
      Related
      XP_023930057.1, XM_024074289.1
      Conserved Domains (2) summary
      cd07659
      Location:151 → 365
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      cd00992
      Location:27 → 104
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    2. XM_024074288.1 → XP_023930056.1  PRKCA-binding protein isoform X4

      UniProtKB/TrEMBL
      A0A2R2MIK4
      Related
      XP_023930056.1, XM_024074288.1
      Conserved Domains (2) summary
      cd07659
      Location:151 → 365
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      cd00992
      Location:27 → 104
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    3. XM_024074286.1 → XP_023930054.1  PRKCA-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A1S3HG06
      Related
      XP_023930054.1, XM_024074286.1
      Conserved Domains (2) summary
      cd07659
      Location:167 → 381
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      smart00228
      Location:43 → 120
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2

    4. XM_013529533.1 → XP_013384987.1  PRKCA-binding protein isoform X2

      UniProtKB/TrEMBL
      A0A1S3HG06
      Related
      XP_013384987.1, XM_013529533.1
      Conserved Domains (2) summary
      cd07659
      Location:167 → 381
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      smart00228
      Location:43 → 120
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2

    5. XM_024074287.1 → XP_023930055.1  PRKCA-binding protein isoform X3

      UniProtKB/TrEMBL
      A0A2R2MIK6
      Related
      XP_023930055.1, XM_024074287.1
      Conserved Domains (2) summary
      cd07659
      Location:165 → 379
      BAR_PICK1; The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1
      cd00992
      Location:41 → 118
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    Nucleotide Protein
    Heading Accession and Version

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