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    LOC17890931 activating signal cointegrator 1 complex subunit 1 [ Capsella rubella ]

    Gene ID: 17890931, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC17890931
    Gene description
    activating signal cointegrator 1 complex subunit 1
    Locus tag
    CARUB_v10014438mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capsella rubella
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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    Genomic context

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    See LOC17890931 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (5628603..5630321)

    NW_006238921.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17893510 Neighboring gene putative F-box protein At3g16210 Neighboring gene uncharacterized LOC17891172 Neighboring gene aquaporin TIP2-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006238921 Unplaced Scaffold Reference Caprub1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA alkylation repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    activating signal cointegrator 1 complex subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caprub1_0

    Genomic

    1. NW_006238921.1 Reference Caprub1_0

      Range
      5628603..5630321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023786304.1 → XP_023642072.1  activating signal cointegrator 1 complex subunit 1 isoform X1

    2. XM_023786305.1 → XP_023642073.1  activating signal cointegrator 1 complex subunit 1 isoform X3

    3. XM_006298306.2 → XP_006298368.1  activating signal cointegrator 1 complex subunit 1 isoform X2

      See identical proteins and their annotated locations for XP_006298368.1

      UniProtKB/TrEMBL
      R0G724
      Conserved Domains (2) summary
      PLN00108
      Location:1 → 258
      PLN00108; unknown protein; Provisional
      pfam10469
      Location:34 → 255
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain
    Nucleotide Protein
    Heading Accession and Version

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