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    TNRC6C trinucleotide repeat containing adaptor 6C [ Myotis lucifugus (little brown bat) ]

    Gene ID: 102438501, updated on 30-Mar-2024

    Summary

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    Gene symbol
    TNRC6C
    Gene description
    trinucleotide repeat containing adaptor 6C
    See related
    Ensembl:ENSMLUG00000014431
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Myotis lucifugus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
    Orthologs
    human mouse all
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    Genomic context

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    See TNRC6C in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005872258.1 (35456..80642)

    NW_005872258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111824337

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005872258 Unplaced Scaffold Reference Myoluc2.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trinucleotide repeat-containing gene 6C protein
    Names
    trinucleotide repeat containing 6C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Myoluc2.0

    Genomic

    1. NW_005872258.1 Reference Myoluc2.0

      Range
      35456..80642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023748227.1 → XP_023603995.1  trinucleotide repeat-containing gene 6C protein isoform X1

      UniProtKB/TrEMBL
      G1PQ14
      Conserved Domains (6) summary
      cd14283
      Location:1144 → 1181
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1031 → 1147
      Ago_hook; Argonaute hook
      pfam12938
      Location:1232 → 1456
      M_domain; M domain of GW182
      pfam16608
      Location:1465 → 1719
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cl17169
      Location:1720 → 1815
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl26247
      Location:112 → 241
      DNA_pol3_delta2; DNA polymerase III, delta subunit

    2. XM_023748231.1 → XP_023603999.1  trinucleotide repeat-containing gene 6C protein isoform X6

      UniProtKB/TrEMBL
      G1PQ14
      Conserved Domains (6) summary
      cd14283
      Location:1144 → 1181
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1031 → 1147
      Ago_hook; Argonaute hook
      pfam12938
      Location:1232 → 1456
      M_domain; M domain of GW182
      pfam16608
      Location:1465 → 1655
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cl17169
      Location:1656 → 1751
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl26247
      Location:112 → 241
      DNA_pol3_delta2; DNA polymerase III, delta subunit

    3. XM_023748230.1 → XP_023603998.1  trinucleotide repeat-containing gene 6C protein isoform X5

      UniProtKB/TrEMBL
      G1PQ14
      Conserved Domains (6) summary
      cd14283
      Location:1144 → 1181
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1031 → 1147
      Ago_hook; Argonaute hook
      pfam12938
      Location:1232 → 1408
      M_domain; M domain of GW182
      pfam16608
      Location:1417 → 1671
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cl17169
      Location:1672 → 1767
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl26247
      Location:112 → 241
      DNA_pol3_delta2; DNA polymerase III, delta subunit

    4. XM_023748228.1 → XP_023603996.1  trinucleotide repeat-containing gene 6C protein isoform X2

      UniProtKB/TrEMBL
      G1PQ14
      Conserved Domains (6) summary
      cd14283
      Location:1144 → 1181
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1031 → 1147
      Ago_hook; Argonaute hook
      pfam12938
      Location:1223 → 1448
      M_domain; M domain of GW182
      pfam16608
      Location:1457 → 1711
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cl17169
      Location:1712 → 1807
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl26247
      Location:112 → 241
      DNA_pol3_delta2; DNA polymerase III, delta subunit

    5. XM_023748229.1 → XP_023603997.1  trinucleotide repeat-containing gene 6C protein isoform X3

      UniProtKB/TrEMBL
      G1PQ14
      Conserved Domains (6) summary
      cd12713
      Location:1720 → 1802
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1144 → 1181
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1031 → 1147
      Ago_hook; Argonaute hook
      pfam12938
      Location:1232 → 1456
      M_domain; M domain of GW182
      pfam16608
      Location:1465 → 1719
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cl26247
      Location:112 → 241
      DNA_pol3_delta2; DNA polymerase III, delta subunit

    6. XM_014449479.2 → XP_014304965.1  trinucleotide repeat-containing gene 6C protein isoform X4

      UniProtKB/TrEMBL
      G1PQ14
      Related
      ENSMLUP00000013132.2, ENSMLUT00000014440.2
      Conserved Domains (5) summary
      cd12713
      Location:1712 → 1794
      RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
      cd14283
      Location:1144 → 1181
      UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
      pfam10427
      Location:1025 → 1145
      Ago_hook; Argonaute hook
      pfam12938
      Location:1223 → 1391
      M_domain; M domain of GW182
      pfam16608
      Location:1457 → 1711
      TNRC6-PABC_bdg; TNRC6-PABC binding domain

    RNA

    1. XR_002827411.1 RNA Sequence

    2. XR_002827413.1 RNA Sequence

    3. XR_002827412.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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