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    BBS12 Bardet-Biedl syndrome 12 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 471296, updated on 3-Dec-2024

    Summary

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    Gene symbol
    BBS12
    Gene description
    Bardet-Biedl syndrome 12
    Locus tag
    CK820_G0025878
    See related
    Ensembl:ENSPTRG00000016420
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See BBS12 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (123911564..123926771)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (123885524..123900725)

    Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene interleukin 2 Neighboring gene uncharacterized LOC104006191 Neighboring gene interleukin 21 Neighboring gene uncharacterized LOC100608395 Neighboring gene fibroblast growth factor 2 Neighboring gene nudix hydrolase 6 Neighboring gene AFG2 AAA ATPase homolog A Neighboring gene coilin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone-mediated protein complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photoreceptor cell maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Bardet-Biedl syndrome 12 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      123911564..123926771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003950401.6 → XP_003950450.4  Bardet-Biedl syndrome 12 protein

      UniProtKB/TrEMBL
      A0A2J8LXB3, H2QQ46, K7DK76

    2. XM_526678.7 → XP_526678.5  Bardet-Biedl syndrome 12 protein

      UniProtKB/TrEMBL
      A0A2J8LXB3, H2QQ46, K7DK76
    Nucleotide Protein
    Heading Accession and Version

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